{"id":"https://openalex.org/W4399207509","doi":"https://doi.org/10.1109/tmbmc.2024.3408053","title":"Sequencing Coverage Analysis for Combinatorial DNA-Based Storage Systems","display_name":"Sequencing Coverage Analysis for Combinatorial DNA-Based Storage Systems","publication_year":2024,"publication_date":"2024-05-31","ids":{"openalex":"https://openalex.org/W4399207509","doi":"https://doi.org/10.1109/tmbmc.2024.3408053"},"language":"en","primary_location":{"id":"doi:10.1109/tmbmc.2024.3408053","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tmbmc.2024.3408053","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological, and Multi-Scale Communications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1109/tmbmc.2024.3408053","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045898248","display_name":"Inbal Preuss","orcid":"https://orcid.org/0000-0002-0309-014X"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Inbal Preuss","raw_affiliation_strings":["School of Computer Science, Reichman University, Herzliya, Israel","Faculty of Computer Science, Technion, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0002-0309-014X","affiliations":[{"raw_affiliation_string":"School of Computer Science, Reichman University, Herzliya, Israel","institution_ids":[]},{"raw_affiliation_string":"Faculty of Computer Science, Technion, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041422902","display_name":"Ben Galili","orcid":"https://orcid.org/0000-0003-3067-667X"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ben Galili","raw_affiliation_strings":["School of Computer Science, Reichman University, Herzliya, Israel","Faculty of Computer Science, Technion, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0003-3067-667X","affiliations":[{"raw_affiliation_string":"School of Computer Science, Reichman University, Herzliya, Israel","institution_ids":[]},{"raw_affiliation_string":"Faculty of Computer Science, Technion, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002511176","display_name":"Zohar Yakhini","orcid":"https://orcid.org/0000-0002-0420-5412"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Zohar Yakhini","raw_affiliation_strings":["School of Computer Science, Reichman University, Herzliya, Israel","Faculty of Computer Science, Technion, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0002-0420-5412","affiliations":[{"raw_affiliation_string":"School of Computer Science, Reichman University, Herzliya, Israel","institution_ids":[]},{"raw_affiliation_string":"Faculty of Computer Science, Technion, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042951994","display_name":"Leon Anavy","orcid":"https://orcid.org/0000-0002-6681-7377"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Leon Anavy","raw_affiliation_strings":["School of Computer Science, Reichman University, Herzliya, Israel","Faculty of Computer Science, Technion, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0002-6681-7377","affiliations":[{"raw_affiliation_string":"School of Computer Science, Reichman University, Herzliya, Israel","institution_ids":[]},{"raw_affiliation_string":"Faculty of Computer Science, Technion, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I174306211"],"apc_list":null,"apc_paid":null,"fwci":3.0634,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.92427184,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"10","issue":"2","first_page":"297","last_page":"316"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4971640408039093},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44103533029556274},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29339104890823364}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4971640408039093},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44103533029556274},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29339104890823364}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tmbmc.2024.3408053","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tmbmc.2024.3408053","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological, and Multi-Scale Communications","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1109/tmbmc.2024.3408053","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tmbmc.2024.3408053","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological, and Multi-Scale Communications","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6720256766","display_name":null,"funder_award_id":"101115134","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W148564650","https://openalex.org/W2005830269","https://openalex.org/W2025383314","https://openalex.org/W2092119215","https://openalex.org/W2109243615","https://openalex.org/W2162980030","https://openalex.org/W2318076643","https://openalex.org/W2471091339","https://openalex.org/W2592122940","https://openalex.org/W2788257106","https://openalex.org/W2942635499","https://openalex.org/W2951269465","https://openalex.org/W2962809499","https://openalex.org/W2963561675","https://openalex.org/W2972936807","https://openalex.org/W2993276217","https://openalex.org/W3015526058","https://openalex.org/W3153974620","https://openalex.org/W4213456065","https://openalex.org/W4301441647","https://openalex.org/W4386075244","https://openalex.org/W4387019445","https://openalex.org/W4393497334"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"This":[0,96,146],"study":[1],"introduces":[2],"a":[3,41,63,119,141],"novel":[4],"model":[5],"for":[6,36,48],"analyzing":[7],"and":[8,85,93,114,129,140],"determining":[9],"the":[10,27,30,44,68,72,82,126,149,154],"required":[11,35,150],"sequencing":[12,33,101],"coverage":[13,102],"in":[14,103],"DNA-based":[15,104],"data":[16,105],"storage,":[17,106],"focusing":[18],"on":[19,81],"combinatorial":[20],"DNA":[21],"encoding.":[22],"We":[23,39,77,117],"seek":[24],"to":[25,70,89,99],"characterize":[26],"distribution":[28,47],"of":[29,32,43,55,67,74,134],"number":[31,54],"reads":[34],"message":[37,131,155],"reconstruction.":[38,76,116],"use":[40,62,86],"variant":[42],"coupon":[45],"collector":[46],"this":[49],"purpose.":[50],"For":[51],"any":[52],"given":[53],"observed":[56],"reads,":[57],"R":[58],"\u03f5":[59],"N,":[60],"we":[61],"Markov":[64],"Chain":[65],"representation":[66],"process":[69],"compute":[71],"probability":[73,84],"error-free":[75],"develop":[78],"theoretical":[79],"bounds":[80,92],"decoding":[83,110],"empirical":[87],"simulations":[88],"validate":[90],"these":[91],"assess":[94],"tightness.":[95],"work":[97],"contributes":[98],"understanding":[100],"offering":[107],"insights":[108],"into":[109],"complexity,":[111],"error":[112],"correction,":[113],"sequence":[115],"provide":[118],"Python":[120],"package,":[121],"with":[122],"its":[123],"input":[124],"being":[125],"code":[127],"design":[128],"other":[130],"parameters,":[132],"all":[133],"which":[135],"are":[136],"denoted":[137],"as":[138],"\u0398,":[139],"desired":[142],"confidence":[143],"level":[144],"1-\u03b4.":[145],"package":[147],"computes":[148],"read":[151],"coverage,":[152],"guaranteeing":[153],"reconstruction":[156],"R=R(\u03b4,\u0398).":[157]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":7}],"updated_date":"2026-08-02T14:50:37.381335","created_date":"2025-10-10T00:00:00"}
