{"id":"https://openalex.org/W2143387613","doi":"https://doi.org/10.1109/nabic.2010.5716330","title":"Biological pathway data integration trends, techniques, issues and challenges: A survey","display_name":"Biological pathway data integration trends, techniques, issues and challenges: A survey","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2143387613","doi":"https://doi.org/10.1109/nabic.2010.5716330","mag":"2143387613"},"language":"en","primary_location":{"id":"doi:10.1109/nabic.2010.5716330","is_oa":false,"landing_page_url":"https://doi.org/10.1109/nabic.2010.5716330","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 Second World Congress on Nature and Biologically Inspired Computing (NaBIC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112022578","display_name":"Shubhalaxmi Kher","orcid":null},"institutions":[{"id":"https://openalex.org/I125956826","display_name":"Arkansas State University","ror":"https://ror.org/006pyvd89","country_code":"US","type":"education","lineage":["https://openalex.org/I125956826"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shubhalaxmi Kher","raw_affiliation_strings":["Arkansas State University, Jonesboro, AK, USA","[Arkansas State University, Jonesboro, USA]"],"affiliations":[{"raw_affiliation_string":"Arkansas State University, Jonesboro, AK, USA","institution_ids":["https://openalex.org/I125956826"]},{"raw_affiliation_string":"[Arkansas State University, Jonesboro, USA]","institution_ids":["https://openalex.org/I125956826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077949687","display_name":"Julie Dickerson","orcid":"https://orcid.org/0000-0003-4973-5641"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie Dickerson","raw_affiliation_strings":["Iowa State University, Ames, IA, USA","Iowa State University Ames, USA"],"affiliations":[{"raw_affiliation_string":"Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Iowa State University Ames, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007899214","display_name":"Neelam Rawat","orcid":"https://orcid.org/0000-0003-0759-6583"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Neelam Rawat","raw_affiliation_strings":["Krishna Institute of Engineering and Technology, Ghaziabad, India","Krishna Institute of Engg. & Technology, Ghaziabad, India"],"affiliations":[{"raw_affiliation_string":"Krishna Institute of Engineering and Technology, Ghaziabad, India","institution_ids":[]},{"raw_affiliation_string":"Krishna Institute of Engg. & Technology, Ghaziabad, India","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5112022578"],"corresponding_institution_ids":["https://openalex.org/I125956826"],"apc_list":null,"apc_paid":null,"fwci":0.1322,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.54069983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"20","issue":null,"first_page":"177","last_page":"182"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.7726666927337646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7079724669456482},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.6348146200180054},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5937081575393677},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5903618335723877},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5265125036239624},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.5247635841369629},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.4633733630180359},{"id":"https://openalex.org/keywords/data-mapping","display_name":"Data mapping","score":0.4311336576938629},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.42844778299331665},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4208192229270935},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35403603315353394},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.31966477632522583},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27518072724342346},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23833146691322327}],"concepts":[{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.7726666927337646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7079724669456482},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.6348146200180054},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5937081575393677},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5903618335723877},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5265125036239624},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.5247635841369629},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.4633733630180359},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.4311336576938629},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.42844778299331665},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4208192229270935},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35403603315353394},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.31966477632522583},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27518072724342346},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23833146691322327},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/nabic.2010.5716330","is_oa":false,"landing_page_url":"https://doi.org/10.1109/nabic.2010.5716330","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 Second World Congress on Nature and Biologically Inspired Computing (NaBIC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.49000000953674316,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W58867887","https://openalex.org/W1870764676","https://openalex.org/W1907733689","https://openalex.org/W1971425971","https://openalex.org/W1977212112","https://openalex.org/W1982428412","https://openalex.org/W2010440090","https://openalex.org/W2017592705","https://openalex.org/W2030783938","https://openalex.org/W2044525257","https://openalex.org/W2050490959","https://openalex.org/W2053419354","https://openalex.org/W2099526830","https://openalex.org/W2101641168","https://openalex.org/W2103538877","https://openalex.org/W2115108153","https://openalex.org/W2116525802","https://openalex.org/W2117007075","https://openalex.org/W2120571001","https://openalex.org/W2126703991","https://openalex.org/W2127057035","https://openalex.org/W2129243798","https://openalex.org/W2135857288","https://openalex.org/W2137881949","https://openalex.org/W2139818818","https://openalex.org/W2152613935","https://openalex.org/W2153438709","https://openalex.org/W2161444669","https://openalex.org/W2330022088","https://openalex.org/W4248684394"],"related_works":["https://openalex.org/W4381571608","https://openalex.org/W4392894140","https://openalex.org/W2936116675","https://openalex.org/W2291027050","https://openalex.org/W2307569040","https://openalex.org/W1018570427","https://openalex.org/W1483126190","https://openalex.org/W2131941936","https://openalex.org/W4214664950","https://openalex.org/W2074162075"],"abstract_inverted_index":{"One":[0],"of":[1,5,21,55,102,111,161,164,192,197],"the":[2,6,18,22,65,77,91,162,165,201,219],"major":[3],"challenges":[4],"modern":[7],"bioinformatics":[8,145],"research":[9],"is":[10,134],"to":[11,16,75,81,95,143,151,153],"integrate":[12],"biological":[13,69,177,211],"pathway":[14,25,56,59,70,178,212],"data":[15,26,71,83,104,119,126,131,146,156,215],"understand":[17,76],"inner":[19],"working":[20],"cell.":[23],"Various":[24],"sources":[27,120],"are":[28,113,170],"often":[29,121,135],"structured":[30],"differently":[31],"and":[32,37,88,118,141,180,195,213,217,223],"employ":[33],"algorithms":[34],"for":[35,44,51,138,175],"analysis":[36],"integration.":[38,181],"Each":[39],"has":[40],"a":[41,52,103,136],"specific":[42],"motivation":[43],"integration":[45,183,198,216],"that":[46],"may":[47,106,185],"be":[48,107],"suitable":[49],"only":[50],"particular":[53],"type":[54],"like":[57],"metabolic":[58],"or":[60,124],"protein-protein":[61],"interactions.":[62],"Additionally,":[63],"with":[64,68,200],"documentation":[66],"associated":[67],"sources,":[72],"one":[73,148],"needs":[74],"database":[78,149],"schemas":[79,92],"used":[80],"store":[82],"in":[84,93,210],"each":[85],"source":[86,105,179],"system,":[87],"translate":[89],"among":[90,157],"order":[94],"exchange":[96],"information":[97],"between":[98],"them.":[99],"The":[100,182],"authenticity":[101],"subjective":[108],"as":[109],"many":[110,158],"them":[112],"not":[114,186],"independent":[115],"but":[116,128],"derived":[117],"contain":[122],"similar":[123],"overlapping":[125],"elements":[127],"use":[129],"conflicting":[130],"definitions.":[132],"There":[133],"need":[137],"user-friendly":[139],"tools":[140],"interfaces":[142],"transform":[144],"from":[147],"schema":[150],"another":[152],"discover":[154],"correlated":[155],"databases,":[159],"regardless":[160],"structure":[163],"databases.":[166],"Most":[167],"importantly,":[168],"there":[169],"no":[171],"standards":[172],"set":[173],"up":[174],"developing":[176],"mechanisms":[184],"register":[187],"important":[188],"metadata":[189],"like,":[190],"copies":[191],"input":[193],"files":[194],"time":[196],"along":[199],"integrated":[202],"output":[203],"file.":[204],"This":[205],"paper":[206],"reviews":[207],"recent":[208],"developments":[209],"sequence":[214],"discusses":[218],"trends,":[220],"techniques,":[221],"issues,":[222],"challenges.":[224]},"counts_by_year":[{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
