{"id":"https://openalex.org/W1981297979","doi":"https://doi.org/10.1109/mipro.2014.6859568","title":"Automatic Cell Counter for cell viability estimation","display_name":"Automatic Cell Counter for cell viability estimation","publication_year":2014,"publication_date":"2014-05-01","ids":{"openalex":"https://openalex.org/W1981297979","doi":"https://doi.org/10.1109/mipro.2014.6859568","mag":"1981297979"},"language":"en","primary_location":{"id":"doi:10.1109/mipro.2014.6859568","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mipro.2014.6859568","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 37th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://repozitorij.uni-lj.si/IzpisGradiva.php?id=72363","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108110774","display_name":"Jasna Lojk","orcid":"https://orcid.org/0009-0006-1101-4485"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Jasna Lojk","raw_affiliation_strings":["Faculty of electrical engineering, University of Ljubljana, Ljubljana, Slovenia","Fac. of Electr. Eng., Univ. of Ljubljana, Ljubljana, , Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of electrical engineering, University of Ljubljana, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]},{"raw_affiliation_string":"Fac. of Electr. Eng., Univ. of Ljubljana, Ljubljana, , Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055944835","display_name":"Luka \u0160ajn","orcid":null},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Luka Sajn","raw_affiliation_strings":["Faculty of computer and information science, University of Ljubljana, Ljubljana, Slovenia","Fac. of Comput. & Inf. Sci, Univ. of Ljubljana, Ljubljana, Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of computer and information science, University of Ljubljana, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]},{"raw_affiliation_string":"Fac. of Comput. & Inf. Sci, Univ. of Ljubljana, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050977526","display_name":"Uro\u0161 \u010cibej","orcid":null},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Uros Cibej","raw_affiliation_strings":["Faculty of computer and information science, University of Ljubljana, Ljubljana, Slovenia","Fac. of Comput. & Inf. Sci, Univ. of Ljubljana, Ljubljana, Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of computer and information science, University of Ljubljana, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]},{"raw_affiliation_string":"Fac. of Comput. & Inf. Sci, Univ. of Ljubljana, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027616938","display_name":"Mojca Pavlin","orcid":"https://orcid.org/0000-0001-5477-7833"},"institutions":[{"id":"https://openalex.org/I153976015","display_name":"University of Ljubljana","ror":"https://ror.org/05njb9z20","country_code":"SI","type":"education","lineage":["https://openalex.org/I153976015"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Mojca Pavlin","raw_affiliation_strings":["Faculty of electrical engineering, University of Ljubljana, Ljubljana, Slovenia","Fac. of Electr. Eng., Univ. of Ljubljana, Ljubljana, , Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of electrical engineering, University of Ljubljana, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I153976015"]},{"raw_affiliation_string":"Fac. of Electr. Eng., Univ. of Ljubljana, Ljubljana, , Slovenia","institution_ids":["https://openalex.org/I153976015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5108110774"],"corresponding_institution_ids":["https://openalex.org/I153976015"],"apc_list":null,"apc_paid":null,"fwci":0.8318,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.83077939,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"239","last_page":"244"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cell-counting","display_name":"Cell counting","score":0.8794420957565308},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6826710104942322},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.4678412675857544},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.45902782678604126},{"id":"https://openalex.org/keywords/viability-assay","display_name":"Viability assay","score":0.4416843056678772},{"id":"https://openalex.org/keywords/cytoplasm","display_name":"Cytoplasm","score":0.4279954731464386},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3879104256629944},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.35418981313705444},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.3481476306915283},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.3453383147716522},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14083364605903625},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11258363723754883},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.09312012791633606}],"concepts":[{"id":"https://openalex.org/C2583947","wikidata":"https://www.wikidata.org/wiki/Q5058179","display_name":"Cell counting","level":4,"score":0.8794420957565308},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6826710104942322},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.4678412675857544},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.45902782678604126},{"id":"https://openalex.org/C53227056","wikidata":"https://www.wikidata.org/wiki/Q189152","display_name":"Viability assay","level":3,"score":0.4416843056678772},{"id":"https://openalex.org/C190062978","wikidata":"https://www.wikidata.org/wiki/Q79899","display_name":"Cytoplasm","level":2,"score":0.4279954731464386},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3879104256629944},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.35418981313705444},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.3481476306915283},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.3453383147716522},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14083364605903625},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11258363723754883},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.09312012791633606},{"id":"https://openalex.org/C29537977","wikidata":"https://www.wikidata.org/wiki/Q188941","display_name":"Cell cycle","level":3,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/mipro.2014.6859568","is_oa":false,"landing_page_url":"https://doi.org/10.1109/mipro.2014.6859568","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 37th International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)","raw_type":"proceedings-article"},{"id":"pmh:oai:repozitorij.uni-lj.si:IzpisGradiva.php?id=72363","is_oa":true,"landing_page_url":"https://repozitorij.uni-lj.si/IzpisGradiva.php?id=72363","pdf_url":null,"source":{"id":"https://openalex.org/S4377196268","display_name":"Repository of the University of Ljubljana (University of Ljubljana)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I153976015","host_organization_name":"University of Ljubljana","host_organization_lineage":["https://openalex.org/I153976015"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"}],"best_oa_location":{"id":"pmh:oai:repozitorij.uni-lj.si:IzpisGradiva.php?id=72363","is_oa":true,"landing_page_url":"https://repozitorij.uni-lj.si/IzpisGradiva.php?id=72363","pdf_url":null,"source":{"id":"https://openalex.org/S4377196268","display_name":"Repository of the University of Ljubljana (University of Ljubljana)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I153976015","host_organization_name":"University of Ljubljana","host_organization_lineage":["https://openalex.org/I153976015"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W196420394","https://openalex.org/W1558339694","https://openalex.org/W1596329293","https://openalex.org/W1796217636","https://openalex.org/W1982141954","https://openalex.org/W2001412060","https://openalex.org/W2009233209","https://openalex.org/W2021192048","https://openalex.org/W2038713671","https://openalex.org/W2051839442","https://openalex.org/W2068113013","https://openalex.org/W2068449144","https://openalex.org/W2107554012","https://openalex.org/W2111202632","https://openalex.org/W2115283652","https://openalex.org/W2124260943","https://openalex.org/W2129995310","https://openalex.org/W2133059825","https://openalex.org/W2168862665","https://openalex.org/W2189343552","https://openalex.org/W2491458126","https://openalex.org/W3100816363","https://openalex.org/W6608000275","https://openalex.org/W6635737339","https://openalex.org/W6676887477","https://openalex.org/W6687263807","https://openalex.org/W7073958488"],"related_works":["https://openalex.org/W4211107619","https://openalex.org/W2161433272","https://openalex.org/W2894139091","https://openalex.org/W1637909","https://openalex.org/W1983780159","https://openalex.org/W659245948","https://openalex.org/W2094643072","https://openalex.org/W2087957833","https://openalex.org/W4206210906","https://openalex.org/W4251922430"],"abstract_inverted_index":{"Despite":[0],"several":[1,154],"methods":[2],"that":[3],"exist":[4],"in":[5,22,78],"different":[6,146],"fields":[7],"of":[8,18,26,29,37,48,61,95,102,120,138,184],"life":[9],"sciences,":[10],"certain":[11],"biotechnological":[12,155],"applications":[13,156],"still":[14,83],"require":[15,90],"microscopic":[16,122],"analysis":[17,36,58,152],"the":[19,167,182,185,193,203],"samples":[20],"and":[21,59,73,116,165,212],"many":[23,81],"instances,":[24],"counting":[25,119,130,137,171],"cells.":[27,133],"Some":[28],"those":[30],"are":[31,41],"drug":[32,51],"delivery,":[33],"transfection":[34],"or":[35,53,70,141],"mechanism":[38],"fluorescent":[39,121,147,158],"probes":[40],"used":[42],"to":[43,67],"detect":[44],"cell":[45,118,139,142,170,174],"viability,":[46],"efficiency":[47,183],"a":[49,108],"specific":[50,93],"delivery":[52],"some":[54,92],"other":[55],"effect.":[56],"For":[57],"quantification":[60],"these":[62],"results":[63,164,180,194,204],"it":[64],"is":[65,126,160],"necessary":[66],"either":[68,91],"manually":[69,86],"automatically":[71],"count":[72,84],"analyze":[74],"microscope":[75],"images.":[76,123],"However,":[77],"everyday":[79],"use":[80],"researchers":[82],"cells":[85],"since":[87],"existing":[88],"solutions":[89],"knowledge":[94],"computer":[96],"vision":[97],"and/or":[98],"manual":[99,190,211],"fine":[100],"tuning":[101],"various":[103],"parameters.":[104],"Here":[105],"we":[106],"present":[107,163],"new":[109],"software":[110],"solution":[111,187],"(named":[112],"CellCounter)":[113],"for":[114,129,153,173],"automatic":[115,169],"semi-automatic":[117],"This":[124,149],"application":[125],"specifically":[127],"designed":[128],"fluorescently":[131],"stained":[132,144],"The":[134],"program":[135,172],"enables":[136],"nuclei":[140],"cytoplasm":[143],"with":[145,192],"stained.":[148],"simplifies":[150],"image":[151],"where":[157],"microscopy":[159],"used.":[161],"We":[162,177,199],"validate":[166],"presented":[168],"viability":[175],"application.":[176],"give":[178],"empirical":[179],"showing":[181],"proposed":[186],"by":[188,196,209],"comparing":[189],"counts":[191],"returned":[195],"automated":[197,213],"counting.":[198],"also":[200],"show":[201],"how":[202],"can":[205],"be":[206],"further":[207],"improved":[208],"combining":[210],"counts.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
