{"id":"https://openalex.org/W4415368271","doi":"https://doi.org/10.1109/isit63088.2025.11195278","title":"Coding for Strand Breaks in Composite DNA","display_name":"Coding for Strand Breaks in Composite DNA","publication_year":2025,"publication_date":"2025-06-22","ids":{"openalex":"https://openalex.org/W4415368271","doi":"https://doi.org/10.1109/isit63088.2025.11195278"},"language":null,"primary_location":{"id":"doi:10.1109/isit63088.2025.11195278","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit63088.2025.11195278","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076897009","display_name":"Frederik Walter","orcid":"https://orcid.org/0009-0007-5460-6066"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Frederik Walter","raw_affiliation_strings":["Institute for Communications Engineering, Technical University of Munich,Munich,Germany,80333"],"affiliations":[{"raw_affiliation_string":"Institute for Communications Engineering, Technical University of Munich,Munich,Germany,80333","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089898205","display_name":"Yonatan Yehezkeally","orcid":"https://orcid.org/0000-0003-1652-9761"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yonatan Yehezkeally","raw_affiliation_strings":["School of Computing, Newcastle University,United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Computing, Newcastle University,United Kingdom","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5076897009"],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":null,"apc_paid":null,"fwci":0.913,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.79932978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5943999886512756},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.4512999951839447},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.4438000023365021},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.4205000102519989},{"id":"https://openalex.org/keywords/composite-number","display_name":"Composite number","score":0.40720000863075256},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.38510000705718994}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5943999886512756},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.48100000619888306},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47209998965263367},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.4512999951839447},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.4438000023365021},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.4205000102519989},{"id":"https://openalex.org/C104779481","wikidata":"https://www.wikidata.org/wiki/Q50707","display_name":"Composite number","level":2,"score":0.40720000863075256},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.38510000705718994},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38350000977516174},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.35690000653266907},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31119999289512634},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.30070000886917114},{"id":"https://openalex.org/C191961535","wikidata":"https://www.wikidata.org/wiki/Q2360205","display_name":"A-DNA","level":3,"score":0.29989999532699585},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.289900004863739},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2870999872684479},{"id":"https://openalex.org/C64241487","wikidata":"https://www.wikidata.org/wiki/Q5205774","display_name":"DNA synthesis","level":3,"score":0.28459998965263367},{"id":"https://openalex.org/C60603091","wikidata":"https://www.wikidata.org/wiki/Q2981616","display_name":"Variable-length code","level":3,"score":0.2782000005245209},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2759999930858612},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2745000123977661},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.274399995803833},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.2685000002384186},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.2678000032901764}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isit63088.2025.11195278","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit63088.2025.11195278","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1542823905","https://openalex.org/W2025383314","https://openalex.org/W2051336598","https://openalex.org/W2088310213","https://openalex.org/W2114487425","https://openalex.org/W2134259738","https://openalex.org/W2159941442","https://openalex.org/W2162980030","https://openalex.org/W2592122940","https://openalex.org/W2615068531","https://openalex.org/W2788257106","https://openalex.org/W2895634672","https://openalex.org/W2972936807","https://openalex.org/W3129045526","https://openalex.org/W3131711615","https://openalex.org/W3174189678","https://openalex.org/W3197474136","https://openalex.org/W3207200940","https://openalex.org/W4213270802","https://openalex.org/W4290996379","https://openalex.org/W4306938813","https://openalex.org/W4383427946","https://openalex.org/W4401692152","https://openalex.org/W4401692181","https://openalex.org/W4403515675"],"related_works":[],"abstract_inverted_index":{"Due":[0],"to":[1,33,87,119,137],"their":[2,160],"sequential":[3],"nature,":[4],"traditional":[5],"DNA":[6,43,51,55,58,82,99,122],"synthesis":[7,40],"methods":[8],"are":[9],"expensive":[10],"in":[11,46,61,73],"terms":[12],"of":[13,22,38,64,69,109,144],"time":[14],"and":[15,42,156],"resources.":[16],"They":[17],"also":[18],"fabricate":[19],"multiple":[20],"copies":[21],"the":[23,35,62,74,107,115,120,153],"same":[24],"strand,":[25],"introducing":[26],"redundancy.":[27,161],"This":[28,112],"redundancy":[29],"can":[30],"be":[31,85],"leveraged":[32],"enhance":[34],"information":[36,60],"capacity":[37],"each":[39],"cycle":[41],"storage":[44,83,100],"systems":[45],"general":[47],"by":[48,106],"employing":[49],"composite":[50,57,121,154],"symbols.":[52],"Unlike":[53],"conventional":[54],"storage,":[56],"encodes":[59],"distribution":[63],"bases":[65],"across":[66],"a":[67,130],"pool":[68],"strands":[70,76],"rather":[71],"than":[72],"individual":[75,110],"themselves.":[77],"Consequently,":[78],"error":[79,95],"models":[80],"for":[81,89,97,152],"must":[84],"adapted":[86],"account":[88],"this":[90,126,145],"unique":[91],"characteristic.":[92],"One":[93],"significant":[94],"model":[96,118],"long-term":[98],"is":[101],"strand":[102,140],"breaks,":[103],"often":[104],"caused":[105],"decay":[108],"bases.":[111],"work":[113],"extends":[114],"strand-break":[116],"channel":[117],"setting.":[123],"To":[124],"address":[125],"challenge,":[127],"we":[128,147],"propose":[129],"coding":[131],"scheme":[132],"that":[133],"uses":[134],"marker":[135],"codes":[136,151],"correct":[138],"single":[139],"breaks.":[141],"As":[142],"part":[143],"approach,":[146],"generalise":[148],"run-length-limited":[149],"(RLL)":[150],"setting":[155],"derive":[157],"bounds":[158],"on":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-21T00:00:00"}
