{"id":"https://openalex.org/W4386075232","doi":"https://doi.org/10.1109/isit54713.2023.10206972","title":"On the Design of Codes for DNA Computing: Secondary Structure Avoidance Codes","display_name":"On the Design of Codes for DNA Computing: Secondary Structure Avoidance Codes","publication_year":2023,"publication_date":"2023-06-25","ids":{"openalex":"https://openalex.org/W4386075232","doi":"https://doi.org/10.1109/isit54713.2023.10206972"},"language":"en","primary_location":{"id":"doi:10.1109/isit54713.2023.10206972","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit54713.2023.10206972","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081533260","display_name":"Tuan Thanh Nguyen","orcid":"https://orcid.org/0000-0002-3179-9471"},"institutions":[{"id":"https://openalex.org/I152815399","display_name":"Singapore University of Technology and Design","ror":"https://ror.org/05j6fvn87","country_code":"SG","type":"education","lineage":["https://openalex.org/I152815399"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Tuan Thanh Nguyen","raw_affiliation_strings":["Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372"],"affiliations":[{"raw_affiliation_string":"Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372","institution_ids":["https://openalex.org/I152815399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042415594","display_name":"Kui Cai","orcid":"https://orcid.org/0000-0003-2059-0071"},"institutions":[{"id":"https://openalex.org/I152815399","display_name":"Singapore University of Technology and Design","ror":"https://ror.org/05j6fvn87","country_code":"SG","type":"education","lineage":["https://openalex.org/I152815399"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kui Cai","raw_affiliation_strings":["Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372"],"affiliations":[{"raw_affiliation_string":"Singapore University of Technology and Design,Science, Mathematics and Technology Cluster,Singapore,487372","institution_ids":["https://openalex.org/I152815399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083157397","display_name":"Han Mao Kiah","orcid":"https://orcid.org/0000-0001-5611-0848"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Han Mao Kiah","raw_affiliation_strings":["Nanyang Technological University,School of Physical and Mathematical Sciences,Singapore,637371"],"affiliations":[{"raw_affiliation_string":"Nanyang Technological University,School of Physical and Mathematical Sciences,Singapore,637371","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032780886","display_name":"Duc Tu Dao","orcid":"https://orcid.org/0009-0006-6310-8141"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Duc Tu Dao","raw_affiliation_strings":["Nanyang Technological University,School of Physical and Mathematical Sciences,Singapore,637371"],"affiliations":[{"raw_affiliation_string":"Nanyang Technological University,School of Physical and Mathematical Sciences,Singapore,637371","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020855511","display_name":"Kees A. Schouhamer Immink","orcid":"https://orcid.org/0000-0001-6747-9261"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kees A. Schouhamer Immink","raw_affiliation_strings":["Turing Machines Inc,DK Rotterdam,The Netherlands,3016"],"affiliations":[{"raw_affiliation_string":"Turing Machines Inc,DK Rotterdam,The Netherlands,3016","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5081533260"],"corresponding_institution_ids":["https://openalex.org/I152815399"],"apc_list":null,"apc_paid":null,"fwci":1.712,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.84462937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"573","last_page":"578"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.6491454243659973},{"id":"https://openalex.org/keywords/code-word","display_name":"Code word","score":0.5526436567306519},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.5264015197753906},{"id":"https://openalex.org/keywords/block-code","display_name":"Block code","score":0.47205740213394165},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4629353880882263},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45476773381233215},{"id":"https://openalex.org/keywords/integer","display_name":"Integer (computer science)","score":0.43896088004112244},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4237973093986511},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.37560537457466125},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.3606858253479004},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.34459590911865234},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.21943241357803345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16438055038452148},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12897247076034546}],"concepts":[{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.6491454243659973},{"id":"https://openalex.org/C153207627","wikidata":"https://www.wikidata.org/wiki/Q863873","display_name":"Code word","level":3,"score":0.5526436567306519},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.5264015197753906},{"id":"https://openalex.org/C157125643","wikidata":"https://www.wikidata.org/wiki/Q884707","display_name":"Block code","level":3,"score":0.47205740213394165},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4629353880882263},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45476773381233215},{"id":"https://openalex.org/C97137487","wikidata":"https://www.wikidata.org/wiki/Q729138","display_name":"Integer (computer science)","level":2,"score":0.43896088004112244},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4237973093986511},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.37560537457466125},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.3606858253479004},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.34459590911865234},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.21943241357803345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16438055038452148},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12897247076034546},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isit54713.2023.10206972","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit54713.2023.10206972","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311687","display_name":"Ministry of Education","ror":"https://ror.org/03m01yf64"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1504030323","https://openalex.org/W1966789782","https://openalex.org/W1976468091","https://openalex.org/W1977312644","https://openalex.org/W2000191287","https://openalex.org/W2009095852","https://openalex.org/W2025383314","https://openalex.org/W2060886353","https://openalex.org/W2129910432","https://openalex.org/W2146297706","https://openalex.org/W2162150545","https://openalex.org/W2162980030","https://openalex.org/W2592122940","https://openalex.org/W2788257106","https://openalex.org/W2951269465","https://openalex.org/W2963960014","https://openalex.org/W2975111439","https://openalex.org/W3010362682","https://openalex.org/W3081031547","https://openalex.org/W3091919520","https://openalex.org/W3093288951","https://openalex.org/W3184008446","https://openalex.org/W3197408514","https://openalex.org/W3198362552","https://openalex.org/W4289655304"],"related_works":["https://openalex.org/W88624181","https://openalex.org/W4255246195","https://openalex.org/W2910428196","https://openalex.org/W2265877813","https://openalex.org/W4390516098","https://openalex.org/W2369939250","https://openalex.org/W2181948922","https://openalex.org/W2480896955","https://openalex.org/W1968966029","https://openalex.org/W2374385101"],"abstract_inverted_index":{"In":[0,32,148],"this":[1,61],"work,":[2],"we":[3,94,155],"investigate":[4],"a":[5,41,127],"challenging":[6],"problem,":[7],"which":[8],"has":[9],"been":[10],"considered":[11],"to":[12,37,45,64,98,117],"be":[13],"an":[14,66,157],"important":[15],"criterion":[16],"in":[17,28,53,141],"designing":[18],"codewords":[19],"for":[20,150],"DNA":[21,30,43,70,100,130],"computing":[22],"purposes,":[23],"namely":[24],"secondary":[25,34,78,107],"structure":[26,35,108],"avoidance":[27],"single-stranded":[29,42],"molecules.":[31],"short,":[33],"refers":[36],"the":[38,54,75,137,142],"tendency":[39],"of":[40,60,69,77,80,102,109,129,132],"sequence":[44],"fold":[46],"back":[47],"upon":[48],"itself,":[49],"thus":[50],"becoming":[51],"inactive":[52],"computation":[55],"process.":[56],"The":[57],"main":[58],"contribution":[59],"work":[62],"is":[63],"provide":[65,95,156],"explicit":[67],"construction":[68],"codes":[71,101,131],"that":[72,105,160],"completely":[73],"avoid":[74,106],"formation":[76],"structures":[79],"arbitrary":[81,89],"stem":[82,111],"length.Formally,":[83],"given":[84],"codeword":[85],"length":[86,103,112],"n":[87,104],"and":[88],"integer":[90],"m":[91,121,151],"\u2a7e":[92,152],"2,":[93],"efficient":[96,158],"methods":[97],"construct":[99],"any":[110],"more":[113],"than":[114],"or":[115],"equal":[116],"m.":[118],"Particularly,":[119],"when":[120],"=":[122],"3,":[123],"our":[124],"constructions":[125],"yield":[126],"family":[128],"rate":[133,139],"1.3031":[134],"bits/nt,":[135],"while":[136],"highest":[138],"found":[140],"prior":[143],"art":[144],"was":[145],"1.1609":[146],"bits/nt.":[147],"addition,":[149],"3log":[153],"n+4,":[154],"encoder":[159],"incurs":[161],"only":[162],"one":[163],"redundant":[164],"symbol.":[165]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
