{"id":"https://openalex.org/W4289713205","doi":"https://doi.org/10.1109/isit50566.2022.9834376","title":"Optimal Single Chromosome-Inversion Correcting Codes for Data Storage in Live DNA","display_name":"Optimal Single Chromosome-Inversion Correcting Codes for Data Storage in Live DNA","publication_year":2022,"publication_date":"2022-06-26","ids":{"openalex":"https://openalex.org/W4289713205","doi":"https://doi.org/10.1109/isit50566.2022.9834376"},"language":"en","primary_location":{"id":"doi:10.1109/isit50566.2022.9834376","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit50566.2022.9834376","pdf_url":null,"source":{"id":"https://openalex.org/S4363604560","display_name":"2022 IEEE International Symposium on Information Theory (ISIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081533260","display_name":"Tuan Thanh Nguyen","orcid":"https://orcid.org/0000-0002-3179-9471"},"institutions":[{"id":"https://openalex.org/I152815399","display_name":"Singapore University of Technology and Design","ror":"https://ror.org/05j6fvn87","country_code":"SG","type":"education","lineage":["https://openalex.org/I152815399"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Tuan Thanh Nguyen","raw_affiliation_strings":["Singapore University of Technology and Design,Singapore,487372"],"affiliations":[{"raw_affiliation_string":"Singapore University of Technology and Design,Singapore,487372","institution_ids":["https://openalex.org/I152815399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042415594","display_name":"Kui Cai","orcid":"https://orcid.org/0000-0003-2059-0071"},"institutions":[{"id":"https://openalex.org/I152815399","display_name":"Singapore University of Technology and Design","ror":"https://ror.org/05j6fvn87","country_code":"SG","type":"education","lineage":["https://openalex.org/I152815399"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kui Cai","raw_affiliation_strings":["Singapore University of Technology and Design,Singapore,487372"],"affiliations":[{"raw_affiliation_string":"Singapore University of Technology and Design,Singapore,487372","institution_ids":["https://openalex.org/I152815399"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012367423","display_name":"Wentu Song","orcid":"https://orcid.org/0000-0003-2720-1622"},"institutions":[{"id":"https://openalex.org/I152815399","display_name":"Singapore University of Technology and Design","ror":"https://ror.org/05j6fvn87","country_code":"SG","type":"education","lineage":["https://openalex.org/I152815399"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wentu Song","raw_affiliation_strings":["Singapore University of Technology and Design,Singapore,487372"],"affiliations":[{"raw_affiliation_string":"Singapore University of Technology and Design,Singapore,487372","institution_ids":["https://openalex.org/I152815399"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020855511","display_name":"Kees A. Schouhamer Immink","orcid":"https://orcid.org/0000-0001-6747-9261"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kees A. Schouhamer Immink","raw_affiliation_strings":["Turing Machines Inc,Rotterdam,The Netherlands,3016 DK"],"affiliations":[{"raw_affiliation_string":"Turing Machines Inc,Rotterdam,The Netherlands,3016 DK","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5081533260"],"corresponding_institution_ids":["https://openalex.org/I152815399"],"apc_list":null,"apc_paid":null,"fwci":4.4092,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.95727848,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1791","last_page":"1796"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.6170662641525269},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5462777018547058},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5077375173568726},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4721165895462036},{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.430909126996994},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3792261779308319},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3592522144317627},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3517923951148987},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3232780992984772},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.17792871594429016}],"concepts":[{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.6170662641525269},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5462777018547058},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5077375173568726},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4721165895462036},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.430909126996994},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3792261779308319},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3592522144317627},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3517923951148987},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3232780992984772},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.17792871594429016},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isit50566.2022.9834376","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isit50566.2022.9834376","pdf_url":null,"source":{"id":"https://openalex.org/S4363604560","display_name":"2022 IEEE International Symposium on Information Theory (ISIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Symposium on Information Theory (ISIT)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321408","display_name":"Ministry of Education","ror":"https://ror.org/01p262204"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1647671624","https://openalex.org/W1800115806","https://openalex.org/W2118827857","https://openalex.org/W2123871174","https://openalex.org/W2139836098","https://openalex.org/W2145960764","https://openalex.org/W2516287924","https://openalex.org/W2584151571","https://openalex.org/W2592122940","https://openalex.org/W2601746657","https://openalex.org/W2764312012","https://openalex.org/W2769372735","https://openalex.org/W2888898008","https://openalex.org/W2896926252","https://openalex.org/W2951269465","https://openalex.org/W2962809499","https://openalex.org/W2963561675","https://openalex.org/W3012140524","https://openalex.org/W3023500999","https://openalex.org/W3035393044","https://openalex.org/W3080366099","https://openalex.org/W3080426567","https://openalex.org/W3105430894","https://openalex.org/W3118614175","https://openalex.org/W3184008446","https://openalex.org/W3196797508","https://openalex.org/W3198439812","https://openalex.org/W3199523352","https://openalex.org/W3210767789","https://openalex.org/W6636915900","https://openalex.org/W6777389480"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W4255246195","https://openalex.org/W2265877813","https://openalex.org/W2126256889","https://openalex.org/W2372042166","https://openalex.org/W2388931296","https://openalex.org/W1495042958","https://openalex.org/W2494338568","https://openalex.org/W2041198660","https://openalex.org/W2049083263"],"abstract_inverted_index":{"Advances":[0],"in":[1,26,39,46,59,79,83],"synthesis":[2],"and":[3,34],"sequencing":[4],"technologies":[5],"have":[6,31],"made":[7],"DNA":[8,51],"macromolecules":[9],"an":[10],"attractive":[11],"medium":[12,61],"for":[13,112,133],"digital":[14],"information":[15],"storage.":[16],"Compared":[17],"with":[18,150],"the":[19,45,95,119,158,161,177],"ex":[20],"vivo":[21,47],"method":[22,48],"that":[23,117],"stores":[24],"data":[25,38],"a":[27,77,80,98,122,138,146,167],"non-biological":[28],"environment,":[29],"there":[30,75],"been":[32],"considerations":[33],"attempts":[35],"to":[36,53,64,145,165],"store":[37],"living":[40],"organisms,":[41],"also":[42],"known":[43],"as":[44,71],"or":[49,88,90,141],"live":[50],"due":[52],"several":[54],"magnificent":[55],"advantages.":[56],"Data":[57],"stored":[58],"this":[60,106],"is":[62,76,179],"prone":[63],"errors":[65,113],"arising":[66],"from":[67],"various":[68],"mutations":[69,73],"such":[70],"point":[72],"(when":[74],"change":[78,94],"single":[81,135],"nucleotide":[82],"DNA,":[84,101],"i.e.":[85,102,176],"deletion,":[86],"insertion,":[87],"substitution)":[89],"chromosomal":[91],"alterations":[92],"(that":[93],"structure":[96],"of":[97,100,121,124,131,137],"segment":[99,123],"tandem":[103],"duplication,":[104],"inversion).In":[105],"paper,":[107],"we":[108,128],"provide":[109],"error-correcting":[110],"codes":[111,132,173],"caused":[114],"by":[115],"inversions,":[116],"reverse":[118],"order":[120],"DNA.":[125],"In":[126],"particular,":[127],"construct":[129],"families":[130],"correcting":[134],"inversion":[136],"fixed":[139],"length":[140,143],"variable":[142],"up":[144,164],"given":[147],"constant":[148,168],"k":[149,188,199],"at":[151,180],"most":[152,181],"log":[153,182],"n+\u0398(1)":[154],"redundant":[155],"bits,":[156],"where":[157],"redundancy":[159,178,193],"matches":[160],"optimal":[162],"value":[163],"only":[166],"additive":[169],"term.":[170],"Moreover,":[171],"our":[172],"remain":[174],"order-optimal,":[175],"n":[183],"+":[184],"o(log":[185,190],"n),":[186],"when":[187,198],"=":[189],"n).":[191],"The":[192],"can":[194],"be":[195],"further":[196],"reduced":[197],"\u226a":[200],"3.":[201]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}