{"id":"https://openalex.org/W2091906389","doi":"https://doi.org/10.1109/isda.2011.6121801","title":"On the use of algorithms to discover motifs in DNA sequences","display_name":"On the use of algorithms to discover motifs in DNA sequences","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2091906389","doi":"https://doi.org/10.1109/isda.2011.6121801","mag":"2091906389"},"language":"en","primary_location":{"id":"doi:10.1109/isda.2011.6121801","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isda.2011.6121801","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 11th International Conference on Intelligent Systems Design and Applications","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://idus.us.es/handle/11441/42210","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056290040","display_name":"Cristina Rubio-Escudero","orcid":"https://orcid.org/0000-0001-5732-9139"},"institutions":[{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"C. Rubio-Escudero","raw_affiliation_strings":["Department of Computer Science, University of Seville, Spain","Dept. of Comput. Sci., Univ. of Seville, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015132867","display_name":"Francisco Mart\u00ednez\u2010\u00c1lvarez","orcid":"https://orcid.org/0000-0002-6309-1785"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Martinez-Alvarez","raw_affiliation_strings":["Department of Computer Science, Pablo de Olavide University of Seville, Spain","Department of Computer Science Pablo de Olavide University of Seville, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Pablo de Olavide University of Seville, Spain","institution_ids":["https://openalex.org/I95013407","https://openalex.org/I79238269"]},{"raw_affiliation_string":"Department of Computer Science Pablo de Olavide University of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028880020","display_name":"M. Mart\u00ednez-Ballesteros","orcid":"https://orcid.org/0000-0003-3160-7414"},"institutions":[{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. Martinez-Ballesteros","raw_affiliation_strings":["Department of Computer Science, University of Seville, Spain","Dept. of Comput. Sci., Univ. of Seville, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036001529","display_name":"Jos\u00e9 C. Riquelme","orcid":"https://orcid.org/0000-0002-8243-2186"},"institutions":[{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. C. Riquelme","raw_affiliation_strings":["Department of Computer Science, University of Seville, Spain","Dept. of Comput. Sci., Univ. of Seville, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Univ. of Seville, Spain","institution_ids":["https://openalex.org/I79238269"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056290040"],"corresponding_institution_ids":["https://openalex.org/I79238269"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12038171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"1380","issue":null,"first_page":"1074","last_page":"1079"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5368187427520752},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5162079930305481},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5035960078239441},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.46846574544906616},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.45064812898635864},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.42758625745773315},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40457016229629517},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34758836030960083},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25196373462677},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22719812393188477},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.216817706823349},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12863287329673767},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.11510029435157776}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5368187427520752},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5162079930305481},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5035960078239441},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.46846574544906616},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.45064812898635864},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.42758625745773315},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40457016229629517},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34758836030960083},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25196373462677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22719812393188477},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.216817706823349},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12863287329673767},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.11510029435157776},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isda.2011.6121801","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isda.2011.6121801","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 11th International Conference on Intelligent Systems Design and Applications","raw_type":"proceedings-article"},{"id":"pmh:oai:idus.us.es:11441/42210","is_oa":true,"landing_page_url":"https://idus.us.es/handle/11441/42210","pdf_url":null,"source":{"id":"https://openalex.org/S4306400333","display_name":"idUS (Universidad de Sevilla)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:idus.us.es:11441/42210","is_oa":true,"landing_page_url":"https://idus.us.es/handle/11441/42210","pdf_url":null,"source":{"id":"https://openalex.org/S4306400333","display_name":"idUS (Universidad de Sevilla)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1486659038","https://openalex.org/W1506540078","https://openalex.org/W1518908064","https://openalex.org/W1783734467","https://openalex.org/W1964492114","https://openalex.org/W1966833356","https://openalex.org/W1969535941","https://openalex.org/W1979083306","https://openalex.org/W2005244073","https://openalex.org/W2010375661","https://openalex.org/W2010688088","https://openalex.org/W2020334773","https://openalex.org/W2022248788","https://openalex.org/W2032231928","https://openalex.org/W2040110347","https://openalex.org/W2045385554","https://openalex.org/W2050824522","https://openalex.org/W2054984882","https://openalex.org/W2056145119","https://openalex.org/W2074557328","https://openalex.org/W2078034709","https://openalex.org/W2080498142","https://openalex.org/W2090769878","https://openalex.org/W2093163894","https://openalex.org/W2098793454","https://openalex.org/W2099272056","https://openalex.org/W2101792548","https://openalex.org/W2105972044","https://openalex.org/W2109487010","https://openalex.org/W2115772919","https://openalex.org/W2115979107","https://openalex.org/W2116810657","https://openalex.org/W2120710794","https://openalex.org/W2121857350","https://openalex.org/W2126873530","https://openalex.org/W2130395351","https://openalex.org/W2132372375","https://openalex.org/W2141408320","https://openalex.org/W2142465702","https://openalex.org/W2147055980","https://openalex.org/W2149769193","https://openalex.org/W2152893838","https://openalex.org/W2158544517","https://openalex.org/W2161708849","https://openalex.org/W2164814636","https://openalex.org/W2165186302","https://openalex.org/W2166425625","https://openalex.org/W2247766769","https://openalex.org/W4253987737","https://openalex.org/W6628970866","https://openalex.org/W6642429319","https://openalex.org/W6682603391"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2605676258","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2902352756","https://openalex.org/W2377079823","https://openalex.org/W2599962286","https://openalex.org/W2319582300","https://openalex.org/W4400799920"],"abstract_inverted_index":{"Many":[0],"approaches":[1],"are":[2,45],"currently":[3],"devoted":[4],"to":[5,21,26,47,65,77],"find":[6,25,78],"DNA":[7],"motifs":[8,68],"in":[9,37,69,73],"nucleotide":[10,43],"sequences.":[11],"However,":[12],"this":[13,54,87],"task":[14],"remains":[15],"challenging":[16],"for":[17,50],"specialists":[18],"nowadays":[19],"due":[20],"the":[22,101,104],"difficulties":[23],"they":[24,99],"deeply":[27],"understand":[28],"gene":[29],"regulatory":[30],"mechanisms,":[31],"especially":[32],"when":[33],"analyzing":[34],"binding":[35,81],"sites":[36,40],"DNA.":[38],"These":[39],"or":[41],"specific":[42],"sequences":[44],"known":[46],"be":[48],"responsible":[49],"transcription":[51],"processes.":[52],"Thus,":[53],"work":[55,88],"aims":[56],"at":[57],"providing":[58],"an":[59],"updated":[60],"overview":[61],"on":[62,91],"strategies":[63],"developed":[64],"discover":[66],"meaningful":[67],"DNA-related":[70],"sequences,":[71],"and,":[72],"particular,":[74],"their":[75],"attempts":[76],"out":[79],"relevant":[80],"sites.":[82],"From":[83],"all":[84],"existing":[85],"approaches,":[86],"is":[89],"focused":[90],"dictionary,":[92],"ensemble,":[93],"and":[94,103],"artificial":[95],"intelligence-based":[96],"algorithms":[97],"since":[98],"represent":[100],"classical":[102],"leading":[105],"ones,":[106],"respectively.":[107]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}