{"id":"https://openalex.org/W2141694506","doi":"https://doi.org/10.1109/isbi.2008.4540985","title":"Probabilistic tracking of virus particles in fluorescence microscopy images","display_name":"Probabilistic tracking of virus particles in fluorescence microscopy images","publication_year":2008,"publication_date":"2008-05-01","ids":{"openalex":"https://openalex.org/W2141694506","doi":"https://doi.org/10.1109/isbi.2008.4540985","mag":"2141694506"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2008.4540985","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2008.4540985","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017717870","display_name":"William J. Godinez","orcid":"https://orcid.org/0000-0003-4753-4942"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"W. J. Godinez","raw_affiliation_strings":["BIOQUANT, IPMB, and DKFZ HeidelbergDepartment Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","Dept. Bioinf. & Functional Genomics, Heidelberg Univ., Heidelberg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT, IPMB, and DKFZ HeidelbergDepartment Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Dept. Bioinf. & Functional Genomics, Heidelberg Univ., Heidelberg","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003005284","display_name":"Marko Lampe","orcid":"https://orcid.org/0000-0002-4510-9048"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Lampe","raw_affiliation_strings":["Department of Virology, University of Heidelberg, Heidelberg, Germany","University of Heidelberg, Dept. of Virology, Im Neuenheimer Feld 324, 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Virology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"University of Heidelberg, Dept. of Virology, Im Neuenheimer Feld 324, 69120, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038055772","display_name":"Stefan W\u00f6rz","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"S. Worz","raw_affiliation_strings":["BIOQUANT, IPMB, and DKFZ Heidelberg, Department Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","University of Heidelberg, BIOQUANT, IPMB, and DKFZ Heidelberg, Dept. Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, Im Neuenheimer Feld 267, 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT, IPMB, and DKFZ Heidelberg, Department Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"University of Heidelberg, BIOQUANT, IPMB, and DKFZ Heidelberg, Dept. Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, Im Neuenheimer Feld 267, 69120, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091231669","display_name":"B\u00e1rbara M\u00fcller","orcid":"https://orcid.org/0000-0001-5726-5585"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"B. Muller","raw_affiliation_strings":["Department of Virology, University of Heidelberg, Heidelberg, Germany","University of Heidelberg, Dept. of Virology, Im Neuenheimer Feld 324, 69120, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Virology, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"University of Heidelberg, Dept. of Virology, Im Neuenheimer Feld 324, 69120, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044191947","display_name":"Roland Eils","orcid":"https://orcid.org/0000-0002-0034-4036"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"R. Eils","raw_affiliation_strings":["BIOQUANT, IPMB, and DKFZ Heidelber, gDepartment Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","Dept. Bioinf. & Functional Genomics, Heidelberg Univ., Heidelberg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT, IPMB, and DKFZ Heidelber, gDepartment Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Dept. Bioinf. & Functional Genomics, Heidelberg Univ., Heidelberg","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105834383","display_name":"K. Rohr","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"K. Rohr","raw_affiliation_strings":["BIOQUANT, IPMB, and DKFZ Heidelberg, Department Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","Dept. Bioinf. & Functional Genomics, Heidelberg Univ., Heidelberg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT, IPMB, and DKFZ Heidelberg, Department Bioinformatics and Functional Genomics, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Dept. Bioinf. & Functional Genomics, Heidelberg Univ., Heidelberg","institution_ids":["https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I223822909"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"272","last_page":"275"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10331","display_name":"Video Surveillance and Tracking Methods","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10331","display_name":"Video Surveillance and Tracking Methods","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.8052746057510376},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.8039649724960327},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.6777287721633911},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.6590282917022705},{"id":"https://openalex.org/keywords/particle","display_name":"Particle (ecology)","score":0.6249435544013977},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.6194128394126892},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5975317358970642},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.5356549620628357},{"id":"https://openalex.org/keywords/particle-filter","display_name":"Particle filter","score":0.5183883309364319},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5086732506752014},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.461574912071228},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.39403289556503296},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3451199531555176},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.3065096139907837},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24544358253479004},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.22079482674598694},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11131033301353455}],"concepts":[{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.8052746057510376},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.8039649724960327},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.6777287721633911},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6590282917022705},{"id":"https://openalex.org/C2778517922","wikidata":"https://www.wikidata.org/wiki/Q7140482","display_name":"Particle (ecology)","level":2,"score":0.6249435544013977},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.6194128394126892},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5975317358970642},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.5356549620628357},{"id":"https://openalex.org/C52421305","wikidata":"https://www.wikidata.org/wiki/Q1151499","display_name":"Particle filter","level":3,"score":0.5183883309364319},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5086732506752014},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.461574912071228},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.39403289556503296},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3451199531555176},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.3065096139907837},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24544358253479004},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.22079482674598694},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11131033301353455},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2008.4540985","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2008.4540985","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5799999833106995,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1990064965","https://openalex.org/W2000217017","https://openalex.org/W2017038627","https://openalex.org/W2083517198","https://openalex.org/W2115623574","https://openalex.org/W2117088310","https://openalex.org/W2129140439","https://openalex.org/W2133028531","https://openalex.org/W2143623375","https://openalex.org/W2149667748","https://openalex.org/W2161406034","https://openalex.org/W2167462877","https://openalex.org/W3145294510","https://openalex.org/W6682153901","https://openalex.org/W6684608243"],"related_works":["https://openalex.org/W4211107619","https://openalex.org/W2161433272","https://openalex.org/W2894139091","https://openalex.org/W1637909","https://openalex.org/W1983780159","https://openalex.org/W659245948","https://openalex.org/W2094643072","https://openalex.org/W2087957833","https://openalex.org/W4206210906","https://openalex.org/W4251922430"],"abstract_inverted_index":{"Fluorescence":[0],"time-lapse":[1,43],"microscopy":[2,45,95,122],"is":[3,26],"a":[4,49,66],"powerful":[5],"technique":[6],"for":[7,37,91],"observing":[8],"the":[9,17,61,71,74,89,108,118,130],"spatial-temporal":[10],"behavior":[11],"of":[12,22,51,73,124],"viruses.":[13],"To":[14],"quantitatively":[15],"analyze":[16],"exhibited":[18],"dynamical":[19],"relationships,":[20],"tracking":[21,38,92,131],"viruses":[23],"over":[24],"time":[25],"required.":[27],"We":[28,47,85,113],"have":[29,64,86,100,114,128],"developed":[30,65],"probabilistic":[31],"approaches":[32,90,99,119],"based":[33,103],"on":[34,104],"particle":[35,52,58],"filters":[36,53],"multiple":[39],"virus":[40],"particles":[41,126],"in":[42,77,82,93],"fluorescence":[44],"images.":[46],"employ":[48],"mixture":[50],"as":[54,56],"well":[55],"independent":[57],"filters.":[59],"For":[60],"latter,":[62],"we":[63],"penalization":[67],"strategy":[68],"to":[69,120],"maintain":[70],"identity":[72],"tracked":[75],"objects":[76,80],"cases":[78],"where":[79],"are":[81],"close":[83],"proximity.":[84],"also":[87,115],"extended":[88],"multi-channel":[94],"image":[96],"sequences.":[97],"The":[98],"been":[101,111],"evaluated":[102],"synthetic":[105],"images":[106,123],"and":[107,127],"performance":[109],"has":[110],"quantified.":[112],"successfully":[116],"applied":[117],"real":[121],"HIV-1":[125],"compared":[129],"results":[132],"with":[133],"ground":[134],"truth":[135],"from":[136],"manual":[137],"tracking.":[138]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
