{"id":"https://openalex.org/W1989304318","doi":"https://doi.org/10.1109/infrkm.2012.6205000","title":"Text mining in bioinformatics: Past, present and future","display_name":"Text mining in bioinformatics: Past, present and future","publication_year":2012,"publication_date":"2012-03-01","ids":{"openalex":"https://openalex.org/W1989304318","doi":"https://doi.org/10.1109/infrkm.2012.6205000","mag":"1989304318"},"language":"en","primary_location":{"id":"doi:10.1109/infrkm.2012.6205000","is_oa":false,"landing_page_url":"https://doi.org/10.1109/infrkm.2012.6205000","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 International Conference on Information Retrieval &amp; Knowledge Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081228527","display_name":"Hadee Faiiazee","orcid":null},"institutions":[{"id":"https://openalex.org/I130343225","display_name":"Universiti Putra Malaysia","ror":"https://ror.org/02e91jd64","country_code":"MY","type":"education","lineage":["https://openalex.org/I130343225"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Hadee Faiiazee","raw_affiliation_strings":["Department of Computer and Communication System Engineering, Faculty of Engineering, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","Department of Computer and Communication System Engineering, Faculty of Engineering, University Putra Malaysia, Serdang, Selangor, Malaysia"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Engineering, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","institution_ids":["https://openalex.org/I130343225"]},{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Engineering, University Putra Malaysia, Serdang, Selangor, Malaysia","institution_ids":["https://openalex.org/I130343225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047260709","display_name":"S. A. R. Al-Haddad","orcid":"https://orcid.org/0000-0001-5522-5096"},"institutions":[{"id":"https://openalex.org/I130343225","display_name":"Universiti Putra Malaysia","ror":"https://ror.org/02e91jd64","country_code":"MY","type":"education","lineage":["https://openalex.org/I130343225"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"S.A.R. Al-Haddad","raw_affiliation_strings":["Department of Computer and Communication System Engineering, Faculty of Computer Science and Information Technology, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","Department of Computer and Communication System Engineering, Faculty of Engineering, University Putra Malaysia, Serdang, Selangor, Malaysia"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Computer Science and Information Technology, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","institution_ids":["https://openalex.org/I130343225"]},{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Engineering, University Putra Malaysia, Serdang, Selangor, Malaysia","institution_ids":["https://openalex.org/I130343225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070358977","display_name":"Rusli Abdullah","orcid":"https://orcid.org/0000-0002-3044-2614"},"institutions":[{"id":"https://openalex.org/I1323252656","display_name":"Information Technology University","ror":"https://ror.org/00ngv8j44","country_code":"PK","type":"education","lineage":["https://openalex.org/I1323252656"]},{"id":"https://openalex.org/I130343225","display_name":"Universiti Putra Malaysia","ror":"https://ror.org/02e91jd64","country_code":"MY","type":"education","lineage":["https://openalex.org/I130343225"]}],"countries":["MY","PK"],"is_corresponding":false,"raw_author_name":"Rusli Abdullah","raw_affiliation_strings":["Department of Computer and Communication System Engineering, Faculty of Engineering, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","Department of Computer and Communication System Engineering, Faculty of Computer Science and Information Technology, University Putra Malaysia, Serdang, Selangor, Malaysia"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Engineering, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","institution_ids":["https://openalex.org/I130343225"]},{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Computer Science and Information Technology, University Putra Malaysia, Serdang, Selangor, Malaysia","institution_ids":["https://openalex.org/I1323252656"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087113469","display_name":"Khairulmizam Samsudin","orcid":null},"institutions":[{"id":"https://openalex.org/I130343225","display_name":"Universiti Putra Malaysia","ror":"https://ror.org/02e91jd64","country_code":"MY","type":"education","lineage":["https://openalex.org/I130343225"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Khairulmizam Samsudin","raw_affiliation_strings":["Department of Computer and Communication System Engineering, Faculty of Engineering, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","Department of Computer and Communication System Engineering, Faculty of Engineering, University Putra Malaysia, Serdang, Selangor, Malaysia"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Engineering, Universiti Putra Malaysia, Serdang, Selangor Darul Ehsan, Malaysia","institution_ids":["https://openalex.org/I130343225"]},{"raw_affiliation_string":"Department of Computer and Communication System Engineering, Faculty of Engineering, University Putra Malaysia, Serdang, Selangor, Malaysia","institution_ids":["https://openalex.org/I130343225"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5081228527"],"corresponding_institution_ids":["https://openalex.org/I130343225"],"apc_list":null,"apc_paid":null,"fwci":0.1345,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.51169119,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"1","issue":null,"first_page":"327","last_page":"330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.7050948143005371},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7037978172302246},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6770923137664795},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6284991502761841},{"id":"https://openalex.org/keywords/concept-mining","display_name":"Concept mining","score":0.45462584495544434},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43934985995292664},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.4126484990119934},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3628404438495636},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2960914373397827},{"id":"https://openalex.org/keywords/web-mining","display_name":"Web mining","score":0.20994672179222107},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07869401574134827}],"concepts":[{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.7050948143005371},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7037978172302246},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6770923137664795},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6284991502761841},{"id":"https://openalex.org/C176775163","wikidata":"https://www.wikidata.org/wiki/Q5158396","display_name":"Concept mining","level":4,"score":0.45462584495544434},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43934985995292664},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.4126484990119934},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3628404438495636},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2960914373397827},{"id":"https://openalex.org/C197046077","wikidata":"https://www.wikidata.org/wiki/Q785337","display_name":"Web mining","level":3,"score":0.20994672179222107},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07869401574134827},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/infrkm.2012.6205000","is_oa":false,"landing_page_url":"https://doi.org/10.1109/infrkm.2012.6205000","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 International Conference on Information Retrieval &amp; Knowledge Management","raw_type":"proceedings-article"},{"id":"pmh:oai:psasir.upm.edu.my:68794","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196260","display_name":"Universiti Putra Malaysia Institutional Repository (Universiti Putra Malaysia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I130343225","host_organization_name":"Universiti Putra Malaysia","host_organization_lineage":["https://openalex.org/I130343225"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1514286651","https://openalex.org/W1835371444","https://openalex.org/W1990343723","https://openalex.org/W1991421174","https://openalex.org/W2004111828","https://openalex.org/W2024159593","https://openalex.org/W2040937081","https://openalex.org/W2044514479","https://openalex.org/W2051689038","https://openalex.org/W2053562938","https://openalex.org/W2061146360","https://openalex.org/W2064030835","https://openalex.org/W2078115565","https://openalex.org/W2096949174","https://openalex.org/W2097424033","https://openalex.org/W2097960255","https://openalex.org/W2099369363","https://openalex.org/W2107141268","https://openalex.org/W2107909509","https://openalex.org/W2112723752","https://openalex.org/W2121802207","https://openalex.org/W2127112494","https://openalex.org/W2130930065","https://openalex.org/W2131449610","https://openalex.org/W2132812398","https://openalex.org/W2138945366","https://openalex.org/W2140407633","https://openalex.org/W2140519398","https://openalex.org/W2141605886","https://openalex.org/W2142741334","https://openalex.org/W2147558260","https://openalex.org/W2154142897","https://openalex.org/W2156930958","https://openalex.org/W2161073021","https://openalex.org/W2161890636","https://openalex.org/W2162461580","https://openalex.org/W2169918010"],"related_works":["https://openalex.org/W2471845753","https://openalex.org/W2389119968","https://openalex.org/W2749535755","https://openalex.org/W2349354219","https://openalex.org/W1553529581","https://openalex.org/W2181847096","https://openalex.org/W4384067529","https://openalex.org/W4237589365","https://openalex.org/W2365299969","https://openalex.org/W2138945366"],"abstract_inverted_index":{"The":[0],"peer-reviewed":[1],"articles":[2],"and":[3,31,42,60,65,85,94],"textual":[4,21],"data":[5,10,22],"are":[6,25],"main":[7,87],"source":[8],"of":[9],"in":[11,27,73],"biology.":[12],"Text":[13],"mining":[14,75],"is":[15],"solution":[16,64],"to":[17,38,67,82],"extract":[18],"information":[19],"from":[20],"sources":[23],"that":[24],"usually":[26],"bulky":[28],"quantities,":[29],"messy":[30],"disorganized.":[32],"Dealing":[33],"with":[34,80],"this":[35,45],"situation":[36],"needs":[37,93],"deploy":[39],"innovative":[40],"methods":[41,53],"techniques.":[43],"In":[44],"paper,":[46],"we":[47],"identify":[48],"the":[49],"current":[50,92],"heavily":[51],"used":[52],"for":[54],"biomedical":[55],"text":[56,74],"mining,":[57],"their":[58],"capabilities":[59],"developments,":[61],"some":[62],"proposed":[63,83],"how":[66],"evaluate":[68],"performance.":[69],"Biomedical":[70],"specific":[71],"challenges":[72],"context":[76],"have":[77,96],"been":[78,97],"studied":[79],"respect":[81],"answers":[84],"then":[86],"future":[88],"trends":[89],"based":[90],"on":[91],"requirements":[95],"discussed.":[98]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
