{"id":"https://openalex.org/W1509961153","doi":"https://doi.org/10.1109/icec.1994.349924","title":"Incremental prediction of the side-chain conformation of proteins by a genetic algorithm","display_name":"Incremental prediction of the side-chain conformation of proteins by a genetic algorithm","publication_year":2002,"publication_date":"2002-12-17","ids":{"openalex":"https://openalex.org/W1509961153","doi":"https://doi.org/10.1109/icec.1994.349924","mag":"1509961153"},"language":"en","primary_location":{"id":"doi:10.1109/icec.1994.349924","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icec.1994.349924","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First IEEE Conference on Evolutionary Computation. IEEE World Congress on Computational Intelligence","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087605806","display_name":"Hiroshi Iijima","orcid":"https://orcid.org/0000-0001-8402-0292"},"institutions":[{"id":"https://openalex.org/I2802592688","display_name":"Kirin (Japan)","ror":"https://ror.org/0586k5242","country_code":"JP","type":"company","lineage":["https://openalex.org/I2802592688"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Iijima","raw_affiliation_strings":["Central Laboratories for Key Technology, Kirin Brewery Company Limited, Yokohama, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central Laboratories for Key Technology, Kirin Brewery Company Limited, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I2802592688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113651046","display_name":"Y. Naito","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Naito","raw_affiliation_strings":["Human Systems, Inc., Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Systems, Inc., Tokyo, Japan","institution_ids":["https://openalex.org/I4210118579"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.04923762,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"261","issue":null,"first_page":"362","last_page":"367"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/side-chain","display_name":"Side chain","score":0.8625370264053345},{"id":"https://openalex.org/keywords/van-der-waals-force","display_name":"van der Waals force","score":0.8026207685470581},{"id":"https://openalex.org/keywords/chain","display_name":"Chain (unit)","score":0.5716844201087952},{"id":"https://openalex.org/keywords/van-der-waals-radius","display_name":"Van der Waals radius","score":0.4521685540676117},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4388171434402466},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.415367066860199},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3853502869606018},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3665562868118286},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3405414819717407},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3042092025279999},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.27570486068725586},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.15462079644203186},{"id":"https://openalex.org/keywords/polymer","display_name":"Polymer","score":0.13761776685714722},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.07863560318946838}],"concepts":[{"id":"https://openalex.org/C204921945","wikidata":"https://www.wikidata.org/wiki/Q899689","display_name":"Side chain","level":3,"score":0.8625370264053345},{"id":"https://openalex.org/C126061179","wikidata":"https://www.wikidata.org/wiki/Q189627","display_name":"van der Waals force","level":3,"score":0.8026207685470581},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.5716844201087952},{"id":"https://openalex.org/C73683733","wikidata":"https://www.wikidata.org/wiki/Q166879","display_name":"Van der Waals radius","level":4,"score":0.4521685540676117},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4388171434402466},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.415367066860199},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3853502869606018},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3665562868118286},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3405414819717407},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3042092025279999},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.27570486068725586},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.15462079644203186},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.13761776685714722},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.07863560318946838},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icec.1994.349924","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icec.1994.349924","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the First IEEE Conference on Evolutionary Computation. IEEE World Congress on Computational Intelligence","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1508596864","https://openalex.org/W1516916562","https://openalex.org/W1539892855","https://openalex.org/W1546807528","https://openalex.org/W1574312817","https://openalex.org/W1576818901","https://openalex.org/W1644626342","https://openalex.org/W1659842140","https://openalex.org/W1963575064","https://openalex.org/W1966041739","https://openalex.org/W1972728295","https://openalex.org/W1979046104","https://openalex.org/W1987977716","https://openalex.org/W2019051660","https://openalex.org/W2027978582","https://openalex.org/W2036324972","https://openalex.org/W2050064341","https://openalex.org/W2101206889","https://openalex.org/W2108446152","https://openalex.org/W2119423166","https://openalex.org/W2122689321","https://openalex.org/W2125793518","https://openalex.org/W2161239029","https://openalex.org/W2521124657","https://openalex.org/W4230223507","https://openalex.org/W4231276190","https://openalex.org/W6636687476"],"related_works":["https://openalex.org/W1969178306","https://openalex.org/W2040181313","https://openalex.org/W2079679729","https://openalex.org/W2022450294","https://openalex.org/W2313553391","https://openalex.org/W2090387874","https://openalex.org/W2094068045","https://openalex.org/W4251736673","https://openalex.org/W1974033720","https://openalex.org/W2045983332"],"abstract_inverted_index":{"The":[0,56,115],"paper":[1],"reports":[2],"an":[3,17,27],"approach":[4,101],"for":[5],"predicting":[6,126],"the":[7,21,23,35,50,62,72,81,85,89,106,120],"side-chain":[8,30,113,127],"conformation":[9,109,117],"of":[10,26,29,52,80],"a":[11,14],"protein":[12],"using":[13],"genetic":[15],"algorithm:":[16],"incremental":[18,121],"GA.":[19],"In":[20],"GA,":[22],"chromosome":[24],"consists":[25],"array":[28],"torsion":[31],"angles(/spl":[32],"chi/),":[33],"and":[34],"fitness":[36],"is":[37],"only":[38],"calculated":[39],"from":[40],"overlap":[41],"among":[42],"each":[43],"atom's":[44],"van":[45,65],"der":[46,66],"Waals":[47,67],"radius":[48],"under":[49],"assumption":[51],"fixed":[53],"main-chain":[54],"atoms.":[55],"GA":[57,122],"was":[58,69],"incrementally":[59],"used":[60],"in":[61,71,84,91,110,125],"simulation.":[63],"No":[64],"contact":[68],"observed":[70,116],"predicted":[73],"structures.":[74],"This":[75,100],"process":[76],"automatically":[77],"conforms":[78],"most":[79],"large":[82],"side-chains":[83],"hydrophobic":[86],"core":[87],"exactly":[88],"same":[90],"comparison":[92],"with":[93],"physical":[94],"methods":[95],"such":[96],"as":[97],"X-ray":[98],"crystallography.":[99],"shows":[102,118],"other":[103],"solutions":[104],"than":[105],"native":[107],"tertiary":[108],"some":[111],"small":[112],"positions.":[114],"that":[119],"has":[123],"abilities":[124],"conformation.<":[128],"<ETX":[129],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[130],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">&gt;</ETX>":[131]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
