{"id":"https://openalex.org/W2036987116","doi":"https://doi.org/10.1109/hpcsim.2014.6903708","title":"A performance evaluation of TopHat RNA sequences alignment tool on openstack-based cloud environments","display_name":"A performance evaluation of TopHat RNA sequences alignment tool on openstack-based cloud environments","publication_year":2014,"publication_date":"2014-07-01","ids":{"openalex":"https://openalex.org/W2036987116","doi":"https://doi.org/10.1109/hpcsim.2014.6903708","mag":"2036987116"},"language":"en","primary_location":{"id":"doi:10.1109/hpcsim.2014.6903708","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpcsim.2014.6903708","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 International Conference on High Performance Computing &amp; Simulation (HPCS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073919193","display_name":"Luca Foschini","orcid":"https://orcid.org/0000-0001-9062-3647"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Luca Foschini","raw_affiliation_strings":["Centro Interdipartimentale di Ricerca Industriale ICT University of Bologna, Bologna, Italy","Centro Interdipartimentale di Ricerca Industriale ICT, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Centro Interdipartimentale di Ricerca Industriale ICT University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Centro Interdipartimentale di Ricerca Industriale ICT, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043264581","display_name":"Alessandro Pernafini","orcid":null},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Pernafini","raw_affiliation_strings":["Centro Interdipartimentale di Ricerca Industriale ICT University of Bologna, Bologna, Italy","Centro Interdipartimentale di Ricerca Industriale ICT, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Centro Interdipartimentale di Ricerca Industriale ICT University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Centro Interdipartimentale di Ricerca Industriale ICT, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020963845","display_name":"Antonio Corradi","orcid":"https://orcid.org/0000-0002-5107-1023"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Antonio Corradi","raw_affiliation_strings":["Centro Interdipartimentale di Ricerca Industriale ICT University of Bologna, Bologna, Italy","Centro Interdipartimentale di Ricerca Industriale ICT, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Centro Interdipartimentale di Ricerca Industriale ICT University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Centro Interdipartimentale di Ricerca Industriale ICT, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062287431","display_name":"Mario Rosati","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mario Rosati","raw_affiliation_strings":["SuperComputing Applications and Innovation Department, CINECA, Italy"],"affiliations":[{"raw_affiliation_string":"SuperComputing Applications and Innovation Department, CINECA, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101887450","display_name":"Alessandro Federico","orcid":"https://orcid.org/0000-0002-0885-0793"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Federico","raw_affiliation_strings":["SuperComputing Applications and Innovation Department, CINECA, Italy"],"affiliations":[{"raw_affiliation_string":"SuperComputing Applications and Innovation Department, CINECA, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046146028","display_name":"Giuseppe Fiameni","orcid":"https://orcid.org/0000-0001-8687-6609"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Fiameni","raw_affiliation_strings":["SuperComputing Applications and Innovation Department, CINECA, Italy"],"affiliations":[{"raw_affiliation_string":"SuperComputing Applications and Innovation Department, CINECA, Italy","institution_ids":["https://openalex.org/I4210119786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5073919193"],"corresponding_institution_ids":["https://openalex.org/I9360294"],"apc_list":null,"apc_paid":null,"fwci":1.0344,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.7969067,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"33","issue":null,"first_page":"358","last_page":"365"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11478","display_name":"Caching and Content Delivery","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11478","display_name":"Caching and Content Delivery","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.9084854125976562},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.8837990760803223},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7616870403289795},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.6051151752471924},{"id":"https://openalex.org/keywords/black-box","display_name":"Black box","score":0.5453325510025024},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.5041135549545288},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4972396194934845},{"id":"https://openalex.org/keywords/resource-allocation","display_name":"Resource allocation","score":0.4803984463214874},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.43954765796661377},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2829326093196869},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.21624630689620972},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.0802232027053833}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.9084854125976562},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.8837990760803223},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7616870403289795},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.6051151752471924},{"id":"https://openalex.org/C94966114","wikidata":"https://www.wikidata.org/wiki/Q29256","display_name":"Black box","level":2,"score":0.5453325510025024},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.5041135549545288},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4972396194934845},{"id":"https://openalex.org/C29202148","wikidata":"https://www.wikidata.org/wiki/Q287260","display_name":"Resource allocation","level":2,"score":0.4803984463214874},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.43954765796661377},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2829326093196869},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.21624630689620972},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0802232027053833},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/hpcsim.2014.6903708","is_oa":false,"landing_page_url":"https://doi.org/10.1109/hpcsim.2014.6903708","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 International Conference on High Performance Computing &amp; Simulation (HPCS)","raw_type":"proceedings-article"},{"id":"pmh:oai:cris.unibo.it:11585/399147","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/399147","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1991462891","https://openalex.org/W2024524063","https://openalex.org/W2043357985","https://openalex.org/W2088445131","https://openalex.org/W2091647805","https://openalex.org/W2097065948","https://openalex.org/W2108234281","https://openalex.org/W2117608012","https://openalex.org/W2124985265","https://openalex.org/W2126506507","https://openalex.org/W2163465933","https://openalex.org/W2168445255","https://openalex.org/W2283571372"],"related_works":["https://openalex.org/W2770234245","https://openalex.org/W96612179","https://openalex.org/W4229499248","https://openalex.org/W2566006169","https://openalex.org/W1567818861","https://openalex.org/W2987774938","https://openalex.org/W4256492088","https://openalex.org/W632915154","https://openalex.org/W2055733372","https://openalex.org/W3022067003"],"abstract_inverted_index":{"Despite":[0],"its":[1],"great":[2],"promises,":[3],"current":[4],"Cloud":[5,36,38,76],"offering":[6],"has":[7],"not":[8],"been":[9],"fully":[10],"exploited":[11],"for":[12],"the":[13,35,51,54,73,90,93,118],"management":[14],"of":[15,34,53,57,75,92],"Next-Generation":[16],"Sequencing":[17],"technologies.":[18],"In":[19],"fact,":[20],"while":[21],"dynamic":[22],"resource":[23],"allocation":[24],"is":[25,64,87,110],"typically":[26],"required":[27],"to":[28,41,88,99],"ensure":[29],"efficient":[30],"and":[31,71,95,120],"effective":[32],"usage":[33],"resources,":[37],"providers":[39],"have":[40],"deal":[42],"with":[43],"complex":[44],"services,":[45],"usually":[46],"treated":[47],"as":[48,111],"black-boxes;":[49],"hence,":[50],"estimation":[52],"maximum":[55],"number":[56],"resources":[58],"that":[59,107],"could":[60],"improve":[61],"service":[62,123],"execution":[63],"a":[65,80,100,112],"big":[66],"challenge.":[67],"This":[68],"paper":[69],"proposes":[70],"explores":[72],"benefits":[74],"deployment":[77,119],"when":[78],"operating":[79],"processor-hungry":[81],"RNA":[82],"alignment":[83],"tool.":[84],"The":[85],"goal":[86],"show":[89],"advantages":[91],"virtualized":[94],"Cloud-aware":[96],"approach":[97,109],"compared":[98],"typical":[101],"bare-metal":[102],"deployment.":[103],"Extensive":[104],"results":[105],"demonstrate":[106],"our":[108],"viable":[113],"first":[114],"step":[115],"toward":[116],"easing":[117],"improving":[121],"run-time":[122],"scaling.":[124]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
