{"id":"https://openalex.org/W2159855308","doi":"https://doi.org/10.1109/fuzzy.2007.4295590","title":"An optimal alignment of proteins energy characteristics with crisp and fuzzy similarity awards","display_name":"An optimal alignment of proteins energy characteristics with crisp and fuzzy similarity awards","publication_year":2007,"publication_date":"2007-06-01","ids":{"openalex":"https://openalex.org/W2159855308","doi":"https://doi.org/10.1109/fuzzy.2007.4295590","mag":"2159855308"},"language":"en","primary_location":{"id":"doi:10.1109/fuzzy.2007.4295590","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fuzzy.2007.4295590","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE International Fuzzy Systems Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004555174","display_name":"Dariusz Mrozek","orcid":"https://orcid.org/0000-0001-6764-6656"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Dariusz Mrozek","raw_affiliation_strings":["Institute of Informatics, Silesian University of Technology, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114374134","display_name":"Bo\u017cena Ma\u0142ysiak-Mrozek","orcid":"https://orcid.org/0000-0003-4977-4915"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Bozena Malysiak","raw_affiliation_strings":["Institute of Informatics, Silesian University of Technology, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083206686","display_name":"Stanis\u0142aw Kozielski","orcid":null},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Stanislaw Kozielski","raw_affiliation_strings":["Institute of Informatics, Silesian University of Technology, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Silesian University of Technology, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004555174"],"corresponding_institution_ids":["https://openalex.org/I119004910"],"apc_list":null,"apc_paid":null,"fwci":0.6545,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.68730758,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7650727033615112},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.6824584007263184},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5849043726921082},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5666685104370117},{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.5518216490745544},{"id":"https://openalex.org/keywords/fuzzy-set","display_name":"Fuzzy set","score":0.513275146484375},{"id":"https://openalex.org/keywords/fuzzy-logic","display_name":"Fuzzy logic","score":0.4987633228302002},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.46861395239830017},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4556383192539215},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.44495007395744324},{"id":"https://openalex.org/keywords/constant","display_name":"Constant (computer programming)","score":0.44401711225509644},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41729187965393066},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4001000225543976},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28829312324523926},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.25117313861846924},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21964320540428162},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.15955832600593567},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10745906829833984},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08018365502357483},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.075417160987854}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7650727033615112},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.6824584007263184},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5849043726921082},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5666685104370117},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.5518216490745544},{"id":"https://openalex.org/C42011625","wikidata":"https://www.wikidata.org/wiki/Q1055058","display_name":"Fuzzy set","level":3,"score":0.513275146484375},{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.4987633228302002},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.46861395239830017},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4556383192539215},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.44495007395744324},{"id":"https://openalex.org/C2777027219","wikidata":"https://www.wikidata.org/wiki/Q1284190","display_name":"Constant (computer programming)","level":2,"score":0.44401711225509644},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41729187965393066},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4001000225543976},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28829312324523926},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.25117313861846924},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21964320540428162},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.15955832600593567},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10745906829833984},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08018365502357483},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.075417160987854},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/fuzzy.2007.4295590","is_oa":false,"landing_page_url":"https://doi.org/10.1109/fuzzy.2007.4295590","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE International Fuzzy Systems Conference","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1491063910","https://openalex.org/W1491459594","https://openalex.org/W1496834026","https://openalex.org/W1531405353","https://openalex.org/W1965910641","https://openalex.org/W1983265703","https://openalex.org/W1983325631","https://openalex.org/W1985618229","https://openalex.org/W1987027966","https://openalex.org/W2012142152","https://openalex.org/W2022058405","https://openalex.org/W2037255500","https://openalex.org/W2045994733","https://openalex.org/W2054849588","https://openalex.org/W2068448872","https://openalex.org/W2074139663","https://openalex.org/W2080653934","https://openalex.org/W2087064593","https://openalex.org/W2095855913","https://openalex.org/W2106187164","https://openalex.org/W2122654894","https://openalex.org/W2130479394","https://openalex.org/W2139382528","https://openalex.org/W2152326664","https://openalex.org/W2156648467","https://openalex.org/W2161773631","https://openalex.org/W2169834283","https://openalex.org/W2912565176","https://openalex.org/W3140081426","https://openalex.org/W4205666823","https://openalex.org/W4211007335","https://openalex.org/W4236413252","https://openalex.org/W4246917063","https://openalex.org/W4247443954"],"related_works":["https://openalex.org/W4292296636","https://openalex.org/W2073953701","https://openalex.org/W98859716","https://openalex.org/W2084367350","https://openalex.org/W1963790256","https://openalex.org/W2090768198","https://openalex.org/W4206415530","https://openalex.org/W2089108696","https://openalex.org/W2074014730","https://openalex.org/W2121593618"],"abstract_inverted_index":{"We":[0,49],"discuss":[1],"the":[2,58,85,90,101,109,120,125,137],"usage":[3],"of":[4,18,31,34,37,57,74,116,136],"constant":[5],"and":[6,63,106],"fuzzy":[7],"similarity":[8,139],"awards":[9],"while":[10],"establishing":[11],"an":[12,72],"optimal":[13],"alignment":[14,126],"between":[15],"energy":[16,22,26,32,40,121],"characteristics":[17,33],"two":[19],"compared":[20],"protein":[21,25,47,55,61,117],"profiles.":[23],"Single":[24],"profile":[27,41],"is":[28,42],"a":[29,45],"set":[30],"various":[35],"types":[36],"energy.":[38],"The":[39],"determined":[43],"for":[44],"given":[46],"structure.":[48],"use":[50,129],"these":[51,95],"profiles":[52,81,96],"to":[53,112],"find":[54,113],"molecules":[56],"same":[59],"structural":[60],"family":[62],"inspect":[64],"conformational":[65],"modifications":[66],"in":[67,84,100],"their":[68],"molecular":[69,91],"structures":[70,118],"as":[71],"effect":[73],"biochemical":[75],"reactions":[76],"or":[77],"environmental":[78],"influences.":[79],"Energy":[80],"are":[82],"received":[83],"computational":[86],"process":[87],"based":[88],"on":[89,119],"mechanics":[92],"theory.":[93],"Afterwards,":[94],"can":[97],"be":[98],"stored":[99],"special":[102],"purpose":[103],"database":[104],"(EDB)":[105],"used":[107],"by":[108],"search":[110],"engine":[111],"similar":[114],"fragments":[115],"level.":[122],"To":[123],"optimize":[124],"path":[127],"we":[128],"modified,":[130],"energy-adapted":[131],"Smith-Waterman":[132],"method":[133],"with":[134],"one":[135],"tested":[138],"awards.":[140]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}