{"id":"https://openalex.org/W2082678687","doi":"https://doi.org/10.1109/escience.2012.6404425","title":"An integrated science portal for collaborative compute and data intensive protein structure studies","display_name":"An integrated science portal for collaborative compute and data intensive protein structure studies","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2082678687","doi":"https://doi.org/10.1109/escience.2012.6404425","mag":"2082678687"},"language":"en","primary_location":{"id":"doi:10.1109/escience.2012.6404425","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2012.6404425","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 8th International Conference on E-Science","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031560227","display_name":"Ian Stokes-Rees","orcid":"https://orcid.org/0000-0002-6832-6168"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ian Stokes-Rees","raw_affiliation_strings":["Harvard Medical School, Boston, USA","Harvard Medical School Boston, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard Medical School Boston, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103103833","display_name":"Daniel J. O\u2019Donovan","orcid":"https://orcid.org/0009-0008-1901-4556"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel O'Donovan","raw_affiliation_strings":["Harvard Medical School, Boston, USA","Harvard Medical School Boston, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard Medical School Boston, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109803011","display_name":"Peter Doherty","orcid":null},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Doherty","raw_affiliation_strings":["Harvard Medical School, Boston, USA","Harvard Medical School Boston, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard Medical School Boston, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028903838","display_name":"Meghan Porter-Mahoney","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meghan Porter-Mahoney","raw_affiliation_strings":["Harvard Medical School, Boston, USA","Harvard Medical School Boston, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard Medical School Boston, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I111088046"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036371085","display_name":"Piotr Sliz","orcid":"https://orcid.org/0000-0002-6522-0835"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Piotr Sliz","raw_affiliation_strings":["Harvard Medical School, Boston, USA","Harvard Medical School Boston, USA"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard Medical School Boston, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I111088046"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5031560227"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I136199984"],"apc_list":null,"apc_paid":null,"fwci":0.7092,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.73467624,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2012","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cyberinfrastructure","display_name":"Cyberinfrastructure","score":0.9790849685668945},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.782683253288269},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.65395587682724},{"id":"https://openalex.org/keywords/e-science","display_name":"e-Science","score":0.5296167135238647},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.46755897998809814},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.44753339886665344},{"id":"https://openalex.org/keywords/data-access","display_name":"Data access","score":0.4152899384498596},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3749236762523651},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3207743763923645},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2555919885635376}],"concepts":[{"id":"https://openalex.org/C2776397876","wikidata":"https://www.wikidata.org/wiki/Q1450531","display_name":"Cyberinfrastructure","level":2,"score":0.9790849685668945},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.782683253288269},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.65395587682724},{"id":"https://openalex.org/C517757529","wikidata":"https://www.wikidata.org/wiki/Q1273268","display_name":"e-Science","level":3,"score":0.5296167135238647},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.46755897998809814},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.44753339886665344},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.4152899384498596},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3749236762523651},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3207743763923645},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2555919885635376},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/escience.2012.6404425","is_oa":false,"landing_page_url":"https://doi.org/10.1109/escience.2012.6404425","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 8th International Conference on E-Science","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6000000238418579}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W139690740","https://openalex.org/W1505022359","https://openalex.org/W1533211047","https://openalex.org/W1749482271","https://openalex.org/W1964889794","https://openalex.org/W1995812342","https://openalex.org/W2011158489","https://openalex.org/W2012544007","https://openalex.org/W2017748387","https://openalex.org/W2020405262","https://openalex.org/W2030572719","https://openalex.org/W2047964490","https://openalex.org/W2088379928","https://openalex.org/W2095891110","https://openalex.org/W2097691161","https://openalex.org/W2108594175","https://openalex.org/W2111996486","https://openalex.org/W2112147882","https://openalex.org/W2116876232","https://openalex.org/W2119738171","https://openalex.org/W2124088880","https://openalex.org/W2125918905","https://openalex.org/W2131159644","https://openalex.org/W2136482257","https://openalex.org/W2136919267","https://openalex.org/W2137821222","https://openalex.org/W2140332639","https://openalex.org/W2141246111","https://openalex.org/W2144992332","https://openalex.org/W2150360808","https://openalex.org/W2154983209","https://openalex.org/W2156025508","https://openalex.org/W2156892571","https://openalex.org/W2166459269","https://openalex.org/W2168103533","https://openalex.org/W6630307749","https://openalex.org/W6631826059","https://openalex.org/W6637740582","https://openalex.org/W6676434615","https://openalex.org/W6680753075"],"related_works":["https://openalex.org/W1987420789","https://openalex.org/W1587324418","https://openalex.org/W1528039660","https://openalex.org/W2004001585","https://openalex.org/W170231317","https://openalex.org/W2534008203","https://openalex.org/W2153873033","https://openalex.org/W2559567549","https://openalex.org/W656093662","https://openalex.org/W2444690512"],"abstract_inverted_index":{"The":[0],"SBGrid":[1],"Science":[2],"Portal":[3],"provides":[4],"multi-modal":[5],"access":[6,61],"to":[7,34,62],"computational":[8,38,48],"infrastructure,":[9],"data":[10,13,45,67],"storage,":[11,68],"and":[12,46,69,88,99],"analysis":[14],"tools":[15],"for":[16],"the":[17,79,85,91,100],"structural":[18],"biology":[19],"community.":[20],"It":[21,31,75],"incorporates":[22],"features":[23],"not":[24],"previously":[25],"seen":[26],"in":[27],"cyberinfrastructure":[28],"science":[29],"gateways.":[30],"enables":[32],"researchers":[33],"securely":[35],"share":[36],"a":[37],"study":[39],"area,":[40],"including":[41],"large":[42],"volumes":[43],"of":[44],"active":[47],"workflows.":[49],"A":[50],"rich":[51],"identity":[52,93],"management":[53,94],"system":[54],"has":[55],"been":[56],"developed":[57],"that":[58],"simplifies":[59],"federated":[60],"US":[63],"national":[64],"cyberinfrastructure,":[65],"distributed":[66],"high":[70],"performance":[71],"file":[72],"transfer":[73],"tools.":[74],"integrates":[76],"components":[77],"from":[78],"Virtual":[80],"Data":[81],"Toolkit,":[82],"Condor,":[83],"glideinWMS,":[84],"Globus":[86,89],"Toolkit":[87],"Online,":[90],"FreeIPA":[92],"system,":[95],"Apache":[96],"web":[97,102],"server,":[98],"Django":[101],"framework.":[103]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
