{"id":"https://openalex.org/W4405489052","doi":"https://doi.org/10.1109/embc53108.2024.10781884","title":"Vision Transformer Based Detection Of Chronic Pulmonary Aspergillosis Lung Infections In Chest X-Ray Images","display_name":"Vision Transformer Based Detection Of Chronic Pulmonary Aspergillosis Lung Infections In Chest X-Ray Images","publication_year":2024,"publication_date":"2024-07-15","ids":{"openalex":"https://openalex.org/W4405489052","doi":"https://doi.org/10.1109/embc53108.2024.10781884","pmid":"https://pubmed.ncbi.nlm.nih.gov/40039629"},"language":"en","primary_location":{"id":"doi:10.1109/embc53108.2024.10781884","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10781884","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029576905","display_name":"Tieh\u2010Cheng Fu","orcid":"https://orcid.org/0000-0002-8702-0391"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tzu-Jung Fu","raw_affiliation_strings":["National Yang Ming Chiao Tung University,Department of Computer Science,Hsinchu City,R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Yang Ming Chiao Tung University,Department of Computer Science,Hsinchu City,R.O.C","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015165578","display_name":"Shu Lin","orcid":"https://orcid.org/0000-0001-6606-2333"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Shu Lin","raw_affiliation_strings":["National Yang Ming Chiao Tung University,Department of Computer Science,Hsinchu City,R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Yang Ming Chiao Tung University,Department of Computer Science,Hsinchu City,R.O.C","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090163868","display_name":"Tsaipei Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tsaipei Wang","raw_affiliation_strings":["National Yang Ming Chiao Tung University,Department of Computer Science,Hsinchu City,R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Yang Ming Chiao Tung University,Department of Computer Science,Hsinchu City,R.O.C","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017257090","display_name":"Kun\u2010Ta Chou","orcid":"https://orcid.org/0000-0002-4822-5474"},"institutions":[{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kun-Ta Chou","raw_affiliation_strings":["Taipei Veterans General Hospital,Department of Chest Medicine,Taipei,R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Taipei Veterans General Hospital,Department of Chest Medicine,Taipei,R.O.C","institution_ids":["https://openalex.org/I2803004286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001282919","display_name":"Shiang\u2010Fen Huang","orcid":"https://orcid.org/0000-0003-0390-9108"},"institutions":[{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Shiang-Fen Huang","raw_affiliation_strings":["Taipei Veterans General Hospital,Division of Infectious Disease,Taipei,R.O.C"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Taipei Veterans General Hospital,Division of Infectious Disease,Taipei,R.O.C","institution_ids":["https://openalex.org/I2803004286"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2024","issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5573766827583313},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.5415980219841003},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.5108048915863037},{"id":"https://openalex.org/keywords/aspergillosis","display_name":"Aspergillosis","score":0.49970412254333496},{"id":"https://openalex.org/keywords/pulmonary-aspergillosis","display_name":"Pulmonary aspergillosis","score":0.4406537711620331},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3473818898200989},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.2968851327896118},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.06339576840400696}],"concepts":[{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5573766827583313},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.5415980219841003},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.5108048915863037},{"id":"https://openalex.org/C2776391196","wikidata":"https://www.wikidata.org/wiki/Q259626","display_name":"Aspergillosis","level":2,"score":0.49970412254333496},{"id":"https://openalex.org/C2910935011","wikidata":"https://www.wikidata.org/wiki/Q259626","display_name":"Pulmonary aspergillosis","level":3,"score":0.4406537711620331},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3473818898200989},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2968851327896118},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.06339576840400696}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002908","descriptor_name":"Chronic Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002908","descriptor_name":"Chronic Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002908","descriptor_name":"Chronic Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D008168","descriptor_name":"Lung","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D011857","descriptor_name":"Radiographic Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D011857","descriptor_name":"Radiographic Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D011857","descriptor_name":"Radiographic Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013902","descriptor_name":"Radiography, Thoracic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D013902","descriptor_name":"Radiography, Thoracic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D013902","descriptor_name":"Radiography, Thoracic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055732","descriptor_name":"Pulmonary Aspergillosis","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D055732","descriptor_name":"Pulmonary Aspergillosis","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D055732","descriptor_name":"Pulmonary Aspergillosis","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/embc53108.2024.10781884","is_oa":false,"landing_page_url":"https://doi.org/10.1109/embc53108.2024.10781884","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)","raw_type":"proceedings-article"},{"id":"pmid:40039629","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40039629","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7799999713897705}],"awards":[],"funders":[{"id":"https://openalex.org/F4320331164","display_name":"National Science and Technology Council","ror":"https://ror.org/00wnb9798"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W2123488224","https://openalex.org/W2143691385","https://openalex.org/W2148143831","https://openalex.org/W2261914993","https://openalex.org/W2611650229","https://openalex.org/W2767031614","https://openalex.org/W2986167844","https://openalex.org/W3042832749","https://openalex.org/W3094502228","https://openalex.org/W3101156210","https://openalex.org/W3145278869","https://openalex.org/W3159481202","https://openalex.org/W3204016864","https://openalex.org/W4206706211","https://openalex.org/W4283805541","https://openalex.org/W4289109135","https://openalex.org/W4327941714","https://openalex.org/W4385245566","https://openalex.org/W6769878960"],"related_works":["https://openalex.org/W2395271158","https://openalex.org/W2315492242","https://openalex.org/W2968795681","https://openalex.org/W4285330908","https://openalex.org/W2230307644","https://openalex.org/W2008670006","https://openalex.org/W2319928644","https://openalex.org/W1565874419","https://openalex.org/W246530177","https://openalex.org/W2163738579"],"abstract_inverted_index":{"Chronic":[0],"pulmonary":[1],"aspergillosis":[2],"(CPA)":[3],"is":[4,21,25,116],"a":[5,53,76,92,97,105],"lung":[6,29],"infection":[7,14],"caused":[8],"by":[9],"the":[10,18,28,59,63,68,80,86,110,123,132,138,187],"fungus":[11],"Aspergillus.":[12],"The":[13],"can":[15,160],"occur":[16],"when":[17],"immune":[19],"system":[20],"compromised":[22],"or":[23],"there":[24,115],"damage":[26],"to":[27,32,52,90,104],"tissue.":[30],"Due":[31],"its":[33],"rarity,":[34],"physicians":[35],"often":[36],"do":[37],"not":[38,47],"consider":[39],"CPA":[40,126,188],"as":[41],"an":[42],"initial":[43],"diagnosis":[44,124],"and":[45,65,84,148,182],"may":[46],"perform":[48],"relevant":[49],"tests,":[50],"leading":[51],"lack":[54],"of":[55,62,70,112,125,134,164,176,180,184],"targeted":[56],"treatment":[57],"in":[58,153],"early":[60],"stages":[61],"disease":[64],"potentially":[66],"affecting":[67],"effectiveness":[69,133],"subsequent":[71],"treatments.":[72],"This":[73],"paper":[74],"employs":[75],"model":[77],"based":[78,120],"on":[79],"Vision":[81],"Transformer":[82],"(ViT)":[83],"utilizes":[85],"self-supervised":[87],"DINO":[88,139],"framework":[89,140],"train":[91],"classifier":[93],"for":[94,122,141,186],"determining":[95],"whether":[96],"given":[98],"chest":[99],"X-ray":[100],"(CXR)":[101],"image":[102],"belongs":[103],"patient":[106],"with":[107,137,178],"CPA.":[108],"To":[109],"best":[111],"our":[113],"knowledge,":[114],"currently":[117],"no":[118],"deep-learning":[119],"study":[121],"using":[127,145],"CXR":[128,143],"images.":[129],"We":[130],"demonstrate":[131],"ViT":[135],"trained":[136],"classifying":[142],"images":[144],"both":[146],"in-house":[147],"public":[149],"datasets.":[150],"For":[151,166],"results":[152],"three-class":[154],"classification":[155,168],"(normal,":[156],"CPA,":[157],"non-CPA-abnormal),":[158],"we":[159,172],"achieve":[161],"macro":[162,174],"F1":[163,175],"0.768.":[165],"binary":[167],"(normal":[169],"vs.":[170],"CPA),":[171],"obtain":[173],"0.935,":[177],"recall":[179],"0.803":[181],"precision":[183],"0.953":[185],"class.":[189]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}