{"id":"https://openalex.org/W2117239941","doi":"https://doi.org/10.1109/cloudcom.2012.6427565","title":"GPU-based cloud service for multiple sequence alignments with regular expression constrains","display_name":"GPU-based cloud service for multiple sequence alignments with regular expression constrains","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W2117239941","doi":"https://doi.org/10.1109/cloudcom.2012.6427565","mag":"2117239941"},"language":"en","primary_location":{"id":"doi:10.1109/cloudcom.2012.6427565","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cloudcom.2012.6427565","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"4th IEEE International Conference on Cloud Computing Technology and Science Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086495456","display_name":"Yu\u2010Shiang Lin","orcid":"https://orcid.org/0000-0002-0625-0364"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Yu-Shiang Lin","raw_affiliation_strings":["Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan","Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan 300"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan","institution_ids":["https://openalex.org/I25846049"]},{"raw_affiliation_string":"Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan 300","institution_ids":["https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101479832","display_name":"Chun\u2010Yuan Lin","orcid":"https://orcid.org/0000-0003-1796-6189"},"institutions":[{"id":"https://openalex.org/I173093425","display_name":"Chang Gung University","ror":"https://ror.org/00d80zx46","country_code":"TW","type":"education","lineage":["https://openalex.org/I173093425"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chun-Yuan Lin","raw_affiliation_strings":["Dept. of Computer Science & Information Engineering, Chang Gung University, Taoyuan, Taiwan","Dept. of Computer Science & Information Engineering, Chang Gung University, Taoyuan, Taiwan 333#TAB#"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science & Information Engineering, Chang Gung University, Taoyuan, Taiwan","institution_ids":["https://openalex.org/I173093425"]},{"raw_affiliation_string":"Dept. of Computer Science & Information Engineering, Chang Gung University, Taoyuan, Taiwan 333#TAB#","institution_ids":["https://openalex.org/I173093425"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043627040","display_name":"Yeh\u2010Ching Chung","orcid":"https://orcid.org/0000-0002-8704-9821"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yeh-Ching Chung","raw_affiliation_strings":["Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan","Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan 300"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan","institution_ids":["https://openalex.org/I25846049"]},{"raw_affiliation_string":"Dept. of Computer Science, National Tsing Hua University, Hsinchu, Taiwan 300","institution_ids":["https://openalex.org/I25846049"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086495456"],"corresponding_institution_ids":["https://openalex.org/I25846049"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.11062985,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2006","issue":null,"first_page":"741","last_page":"746"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8532129526138306},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7125955820083618},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.7034420371055603},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6602452993392944},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.6289002895355225},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.536236047744751},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5045667886734009},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.4684465229511261},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.46252307295799255},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4502597749233246},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.33749711513519287},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.22263377904891968},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2107401192188263},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.17466381192207336},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10661473870277405}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8532129526138306},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7125955820083618},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.7034420371055603},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6602452993392944},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.6289002895355225},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.536236047744751},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5045667886734009},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.4684465229511261},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.46252307295799255},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4502597749233246},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.33749711513519287},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.22263377904891968},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2107401192188263},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.17466381192207336},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10661473870277405},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cloudcom.2012.6427565","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cloudcom.2012.6427565","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"4th IEEE International Conference on Cloud Computing Technology and Science Proceedings","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320333034","display_name":"Center of Mathematical Sciences and Applications, Harvard University","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W88550252","https://openalex.org/W100862783","https://openalex.org/W1531925985","https://openalex.org/W1578673849","https://openalex.org/W1619500442","https://openalex.org/W1767231739","https://openalex.org/W1974063126","https://openalex.org/W1974326986","https://openalex.org/W1977512185","https://openalex.org/W1981089653","https://openalex.org/W1999395788","https://openalex.org/W2011652244","https://openalex.org/W2013733655","https://openalex.org/W2028499920","https://openalex.org/W2057835669","https://openalex.org/W2071116416","https://openalex.org/W2074231493","https://openalex.org/W2083319603","https://openalex.org/W2087064593","https://openalex.org/W2091380713","https://openalex.org/W2093182230","https://openalex.org/W2094969361","https://openalex.org/W2098129242","https://openalex.org/W2101495290","https://openalex.org/W2104383381","https://openalex.org/W2106882534","https://openalex.org/W2109393352","https://openalex.org/W2109710144","https://openalex.org/W2116508956","https://openalex.org/W2116715773","https://openalex.org/W2118874283","https://openalex.org/W2122482436","https://openalex.org/W2131629857","https://openalex.org/W2133540884","https://openalex.org/W2149400549","https://openalex.org/W2165949232","https://openalex.org/W2166621589","https://openalex.org/W2170896626","https://openalex.org/W2610675308","https://openalex.org/W6603585046","https://openalex.org/W6604067964","https://openalex.org/W6634664600","https://openalex.org/W6679408652","https://openalex.org/W6685248075"],"related_works":["https://openalex.org/W3062287","https://openalex.org/W2380390332","https://openalex.org/W2742145873","https://openalex.org/W2023572661","https://openalex.org/W4245975140","https://openalex.org/W2532592438","https://openalex.org/W1977763331","https://openalex.org/W2062253548","https://openalex.org/W4225414539","https://openalex.org/W4289522463"],"abstract_inverted_index":{"Multiple":[0],"sequence":[1,18,29,52],"alignments":[2,30],"with":[3,65,77,123,158],"constrains":[4,69],"has":[5],"become":[6],"an":[7,113],"important":[8],"problem":[9],"in":[10,39,57,143],"the":[11,24,33,40,44,58,66,72,89,93,119,126,134,150,154],"computational":[12],"biology.":[13],"The":[14],"concept":[15],"of":[16,49,96],"constrained":[17,50],"alignment":[19,41,53,151],"is":[20,61],"proposed":[21,56],"to":[22,99,107,137],"incorporate":[23],"biologist's":[25],"domain":[26],"knowledge":[27],"into":[28],"such":[31],"that":[32],"user-specified":[34],"residues/segments":[35],"are":[36],"aligned":[37],"together":[38],"results.":[42,91],"Over":[43],"past":[45],"decade,":[46],"a":[47,62,103],"series":[48],"multiple":[51],"tools":[54],"were":[55],"literature.":[59],"GPU-REMuSiC":[60,79,97],"newest":[63],"tool":[64],"regular":[67],"expression":[68],"and":[70,101],"uses":[71],"graphics":[73],"processing":[74],"units":[75],"(GPUs)":[76],"CUDA.":[78],"can":[80,132,148],"achieve":[81],"29\u00d7":[82],"speedups":[83],"for":[84,105,118],"overall":[85],"computation":[86],"time":[87],"by":[88],"experimental":[90],"However,":[92],"execution":[94],"environment":[95],"need":[98],"build,":[100],"it's":[102],"threshold":[104],"biologists":[106],"set":[108],"up.":[109],"Therefore,":[110],"we":[111,131,147],"design":[112],"intuitive":[114],"friendly":[115],"user":[116,127],"interface":[117,128],"potential":[120],"cloud":[121,156],"server":[122,139,157],"GPUs.":[124,159],"Use":[125],"through":[129],"network,":[130],"send":[133],"input":[135],"data":[136],"remote":[138,155],"without":[140],"cumbersome":[141],"setting":[142],"local":[144],"host.":[145],"Finally,":[146],"receive":[149],"results":[152],"from":[153]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
