{"id":"https://openalex.org/W3001481238","doi":"https://doi.org/10.1109/cisp-bmei48845.2019.8965760","title":"Detection of m<sub>6</sub>A RNA Methylation in Nanopore Sequencing Data Using Support Vector Machine","display_name":"Detection of m<sub>6</sub>A RNA Methylation in Nanopore Sequencing Data Using Support Vector Machine","publication_year":2019,"publication_date":"2019-10-01","ids":{"openalex":"https://openalex.org/W3001481238","doi":"https://doi.org/10.1109/cisp-bmei48845.2019.8965760","mag":"3001481238"},"language":"en","primary_location":{"id":"doi:10.1109/cisp-bmei48845.2019.8965760","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cisp-bmei48845.2019.8965760","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109486357","display_name":"Shen Jia","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Shen Jia","raw_affiliation_strings":["Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091136332","display_name":"Haochen Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Haochen Luo","raw_affiliation_strings":["Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070353847","display_name":"Qiheng Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Qiheng Gao","raw_affiliation_strings":["Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084689879","display_name":"Jiaqi Guo","orcid":"https://orcid.org/0000-0002-9592-4980"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jiaqi Guo","raw_affiliation_strings":["Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085156744","display_name":"Jionglong Su","orcid":"https://orcid.org/0000-0001-5360-6493"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jionglong Su","raw_affiliation_strings":["Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Ageing & Chronic Disease, University of Liverpool, Liverpool, United Kingdom","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062986831","display_name":"Jia Meng","orcid":"https://orcid.org/0000-0003-3455-205X"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jia Meng","raw_affiliation_strings":["Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053933966","display_name":"Xiangyu Wu","orcid":"https://orcid.org/0000-0002-4562-9721"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Xiangyu Wu","raw_affiliation_strings":["Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom","institution_ids":["https://openalex.org/I146655781"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5109486357"],"corresponding_institution_ids":["https://openalex.org/I146655781"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13558275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6247130632400513},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6014095544815063},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.6006283164024353},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.5725162029266357},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5347707867622375},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4518354833126068},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31584808230400085},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.2615172863006592},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2529129385948181},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.185344398021698},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.16915079951286316},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16772615909576416},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.12142309546470642}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6247130632400513},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6014095544815063},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.6006283164024353},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.5725162029266357},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5347707867622375},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4518354833126068},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31584808230400085},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2615172863006592},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2529129385948181},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.185344398021698},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.16915079951286316},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16772615909576416},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.12142309546470642}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cisp-bmei48845.2019.8965760","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cisp-bmei48845.2019.8965760","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W101663867","https://openalex.org/W1500731913","https://openalex.org/W1596717185","https://openalex.org/W2085860799","https://openalex.org/W2090091537","https://openalex.org/W2091724447","https://openalex.org/W2148002238","https://openalex.org/W2161267827","https://openalex.org/W2385599084","https://openalex.org/W2410264812","https://openalex.org/W2566723880","https://openalex.org/W2590034108","https://openalex.org/W2612853933","https://openalex.org/W2627064270","https://openalex.org/W2809646241","https://openalex.org/W2892250190","https://openalex.org/W2911964244","https://openalex.org/W2971454256","https://openalex.org/W4230530801"],"related_works":["https://openalex.org/W2774675543","https://openalex.org/W2119052929","https://openalex.org/W2326282944","https://openalex.org/W2330402197","https://openalex.org/W3197006535","https://openalex.org/W3201371206","https://openalex.org/W2420153309","https://openalex.org/W2096970964","https://openalex.org/W3175842380","https://openalex.org/W2107323267"],"abstract_inverted_index":{"N6-methyladenosine":[0],"(m6A)":[1],"is":[2,57,95],"a":[3,38,107],"prevalent":[4],"internal":[5],"modification":[6,53],"in":[7,14],"RNA":[8,90],"which":[9],"plays":[10],"an":[11],"important":[12],"role":[13],"epitranscriptomics.":[15],"The":[16,92],"detection":[17],"of":[18,51,54,60,106,131,135,142],"m6A":[19],"may":[20],"be":[21,119],"carried":[22],"out":[23],"by":[24,41,110],"utilizing":[25],"the":[26,48,52,55,58,73,79,89,104,116,122,129,132,136,140],"Oxford":[27],"Nanopore":[28],"Technology":[29],"(ONT)":[30],"and":[31,68,85,128],"machine":[32],"learning.":[33],"In":[34],"this":[35,99],"research,":[36],"following":[37],"previous":[39,108],"study":[40,109],"Liu":[42,111],"et":[43,112],"al,":[44,113],"we":[45],"hypothesize":[46],"that":[47,115],"current":[49,69],"intensitychange":[50],"RNA(N6-methyladenosine)":[56],"result":[59],"base-calling":[61,117],"errors(mismatch":[62],"frequency,":[63,65],"deletion":[64],"per-base":[66],"quality":[67],"intensity).":[70],"We":[71],"apply":[72],"Curlake,":[74],"EpiNano":[75],"software":[76],"to":[77,97],"divide":[78],"raw":[80],"data":[81],"into":[82],"5-mer":[83],"sequences":[84],"extract":[86],"features":[87],"from":[88],"sequence.":[91],"SVM":[93],"classifier":[94],"used":[96],"verify":[98],"assumption.":[100],"Our":[101],"results":[102],"confirmed":[103],"finding":[105],"suggesting":[114],"\u2018errors'may":[118],"usedto":[120],"identify":[121],"N6-methyladenesine(m":[123],"<sup":[124],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[125],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">6</sup>":[126],"A),":[127],"consideration":[130],"neighbourhood":[133],"nucleotides":[134],"5mer":[137],"will":[138],"improve":[139],"accuracy":[141],"our":[143],"prediction.":[144]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
