{"id":"https://openalex.org/W2096589399","doi":"https://doi.org/10.1109/cibcb.2011.5948477","title":"Secondary structure element voting for RNA gene finding","display_name":"Secondary structure element voting for RNA gene finding","publication_year":2011,"publication_date":"2011-04-01","ids":{"openalex":"https://openalex.org/W2096589399","doi":"https://doi.org/10.1109/cibcb.2011.5948477","mag":"2096589399"},"language":"en","primary_location":{"id":"doi:10.1109/cibcb.2011.5948477","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948477","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044704274","display_name":"Nicholas Erho","orcid":"https://orcid.org/0000-0002-5857-2701"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Nicholas Erho","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Surrey, BC, Canada","School of Computing Science, Simon Fraser University, Surrey, British Columbia, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Surrey, BC, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Surrey, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049270004","display_name":"Kay C. Wiese","orcid":"https://orcid.org/0000-0003-4507-1892"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kay Wiese","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Surrey, BC, Canada","School of Computing Science, Simon Fraser University, Surrey, British Columbia, Canada"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Surrey, BC, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Surrey, British Columbia, Canada","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044704274"],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":null,"apc_paid":null,"fwci":0.2606,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.58308907,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2600","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/voting","display_name":"Voting","score":0.8032007813453674},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.7880831956863403},{"id":"https://openalex.org/keywords/majority-rule","display_name":"Majority rule","score":0.5732265710830688},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5677158832550049},{"id":"https://openalex.org/keywords/element","display_name":"Element (criminal law)","score":0.5539318323135376},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5508126616477966},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4980008602142334},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.45399388670921326},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.45356154441833496},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4365125000476837},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35041379928588867},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3361346125602722},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20623430609703064},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18959534168243408}],"concepts":[{"id":"https://openalex.org/C520049643","wikidata":"https://www.wikidata.org/wiki/Q189760","display_name":"Voting","level":3,"score":0.8032007813453674},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.7880831956863403},{"id":"https://openalex.org/C153668964","wikidata":"https://www.wikidata.org/wiki/Q27636","display_name":"Majority rule","level":2,"score":0.5732265710830688},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5677158832550049},{"id":"https://openalex.org/C200288055","wikidata":"https://www.wikidata.org/wiki/Q2621792","display_name":"Element (criminal law)","level":2,"score":0.5539318323135376},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5508126616477966},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4980008602142334},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.45399388670921326},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.45356154441833496},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4365125000476837},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35041379928588867},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3361346125602722},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20623430609703064},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18959534168243408},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cibcb.2011.5948477","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cibcb.2011.5948477","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W28412257","https://openalex.org/W638278084","https://openalex.org/W1519185585","https://openalex.org/W1978242636","https://openalex.org/W2000276666","https://openalex.org/W2033907622","https://openalex.org/W2061981209","https://openalex.org/W2088938573","https://openalex.org/W2100167293","https://openalex.org/W2104105892","https://openalex.org/W2125038106","https://openalex.org/W2135125546","https://openalex.org/W2143726250","https://openalex.org/W2146831994","https://openalex.org/W2163818697","https://openalex.org/W2912934387","https://openalex.org/W4212883601","https://openalex.org/W4320930709"],"related_works":["https://openalex.org/W3047450301","https://openalex.org/W2558432341","https://openalex.org/W1975806245","https://openalex.org/W2345156963","https://openalex.org/W1971402940","https://openalex.org/W2919479895","https://openalex.org/W3121841074","https://openalex.org/W2131054067","https://openalex.org/W3196523453","https://openalex.org/W2033915845"],"abstract_inverted_index":{"An":[0],"exploration":[1],"of":[2,5,34,43,68,77,88,124],"the":[3,31,41,62,65,69,75,113,130],"use":[4],"multiple":[6],"secondary":[7,18,79,103,114,131],"structure":[8,19,80,104,115,132],"elements":[9],"for":[10],"structural":[11,53],"RNA":[12,54,133],"gene":[13,55,134],"finding":[14],"is":[15,51,59],"conducted.":[16],"The":[17],"models":[20,82,117],"are":[21],"combined":[22],"through":[23],"a":[24,49,52],"multilayer":[25],"voting":[26,63],"system":[27,70],"which":[28],"first":[29,66],"combines":[30,40],"probability":[32],"output":[33],"support":[35],"vector":[36],"machines":[37],"and":[38],"then":[39],"results":[42,87],"those":[44],"votes":[45],"to":[46,90],"predict":[47],"whether":[48],"sequence":[50],"or":[56],"not.":[57],"It":[58],"found":[60],"that":[61],"in":[64,85,94,120],"layer":[67],"has":[71],"significant":[72],"impact":[73],"on":[74],"performance":[76],"individual":[78],"element":[81,105,116],"with":[83],"improvements":[84],"classification":[86,95,135],"up":[89],"56%.":[91],"Likewise,":[92],"gains":[93],"F-measure":[96],"over":[97,125],"0.6":[98],"were":[99,108,118],"seen":[100],"when":[101],"two":[102],"model":[106],"predictions":[107],"voted":[109],"together.":[110],"When":[111],"all":[112],"used":[119],"voting,":[121],"an":[122],"accuracy":[123],"93%":[126],"was":[127],"achieved":[128],"by":[129],"system.":[136]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}