{"id":"https://openalex.org/W2129737673","doi":"https://doi.org/10.1109/cec.2001.934462","title":"Inferring a system of differential equations for a gene regulatory network by using genetic programming","display_name":"Inferring a system of differential equations for a gene regulatory network by using genetic programming","publication_year":2002,"publication_date":"2002-11-13","ids":{"openalex":"https://openalex.org/W2129737673","doi":"https://doi.org/10.1109/cec.2001.934462","mag":"2129737673"},"language":"en","primary_location":{"id":"doi:10.1109/cec.2001.934462","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2001.934462","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2001 Congress on Evolutionary Computation (IEEE Cat. No.01TH8546)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003091438","display_name":"Erina Sakamoto","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"E. Sakamoto","raw_affiliation_strings":["School of Engineering Department of Inf. Comm.Engineering, University of Tokyo, Tokyo, Japan","Dept. of Inf. Commun. Eng., Tokyo Univ., Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering Department of Inf. Comm.Engineering, University of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Dept. of Inf. Commun. Eng., Tokyo Univ., Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102742376","display_name":"Hitoshi Iba","orcid":"https://orcid.org/0000-0003-1607-1690"},"institutions":[{"id":"https://openalex.org/I3133035077","display_name":"Ube Frontier University","ror":"https://ror.org/03sgcr744","country_code":"JP","type":"education","lineage":["https://openalex.org/I3133035077"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Iba","raw_affiliation_strings":["Graduate School of Frontier Sciences Department of Frontier Informatics, University of Tokyo, Tokyo, Japan","university of Tokyo;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Frontier Sciences Department of Frontier Informatics, University of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I3133035077","https://openalex.org/I74801974"]},{"raw_affiliation_string":"university of Tokyo;","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":19.1924,"has_fulltext":false,"cited_by_count":204,"citation_normalized_percentile":{"value":0.99424366,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"1","issue":null,"first_page":"720","last_page":"726"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetic-network","display_name":"Genetic network","score":0.8372712731361389},{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.7489697933197021},{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.7346344590187073},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6431266069412231},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6084448099136353},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.5134678483009338},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.42916256189346313},{"id":"https://openalex.org/keywords/differential-evolution","display_name":"Differential evolution","score":0.42148903012275696},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3672807216644287},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.3296125531196594},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.32846611738204956},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2640342712402344},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20180949568748474},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1984138786792755},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.15456223487854004},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.132999449968338},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.13184568285942078}],"concepts":[{"id":"https://openalex.org/C2986044853","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Genetic network","level":3,"score":0.8372712731361389},{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.7489697933197021},{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.7346344590187073},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6431266069412231},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6084448099136353},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.5134678483009338},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.42916256189346313},{"id":"https://openalex.org/C74750220","wikidata":"https://www.wikidata.org/wiki/Q2662197","display_name":"Differential evolution","level":2,"score":0.42148903012275696},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3672807216644287},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.3296125531196594},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.32846611738204956},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2640342712402344},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20180949568748474},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1984138786792755},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.15456223487854004},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.132999449968338},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.13184568285942078}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/cec.2001.934462","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cec.2001.934462","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2001 Congress on Evolutionary Computation (IEEE Cat. No.01TH8546)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.24.374","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.24.374","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.miv.t.u-tokyo.ac.jp/ibalab/papers/2001/cec2001-es.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.26.1764","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.26.1764","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.miv.t.u-tokyo.ac.jp/~iba/tmp/iba2.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.472.1366","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.472.1366","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dynamics.org/~altenber/UH_ICS/EC_REFS/GP_REFS/IEEE/CEC2001/SS1_13.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W131637771","https://openalex.org/W257442556","https://openalex.org/W1482637285","https://openalex.org/W1590824230","https://openalex.org/W1597228161","https://openalex.org/W1765085118","https://openalex.org/W1940542582","https://openalex.org/W2079829409","https://openalex.org/W2082982706","https://openalex.org/W2142634942","https://openalex.org/W2146168695","https://openalex.org/W2155389397","https://openalex.org/W2155582960","https://openalex.org/W2165011536","https://openalex.org/W6605371517","https://openalex.org/W6635535334","https://openalex.org/W6637803467","https://openalex.org/W6670268304","https://openalex.org/W6671346601","https://openalex.org/W6681186288","https://openalex.org/W6682743303"],"related_works":["https://openalex.org/W1965278175","https://openalex.org/W1574161006","https://openalex.org/W2541637799","https://openalex.org/W1604948362","https://openalex.org/W2094749864","https://openalex.org/W2015736151","https://openalex.org/W1831373594","https://openalex.org/W2469875185","https://openalex.org/W1530164014","https://openalex.org/W1691392868"],"abstract_inverted_index":{"Describes":[0],"an":[1],"evolutionary":[2],"method":[3,61,71],"for":[4],"identifying":[5],"a":[6,22,29],"gene":[7],"regulatory":[8],"network":[9,33],"from":[10],"the":[11,17,32,46,52,56,83],"observed":[12],"time":[13],"series":[14],"data":[15],"of":[16,24,31,54,85],"gene's":[18],"expression.":[19],"We":[20,68],"use":[21],"system":[23],"ordinary":[25,66],"differential":[26,86],"equations":[27],"as":[28],"model":[30],"and":[34,76],"infer":[35],"their":[36],"right-hand":[37],"sides":[38],"by":[39],"using":[40],"genetic":[41],"programming":[42],"(GP).":[43],"To":[44],"explore":[45],"search":[47],"space":[48],"more":[49],"effectively":[50],"in":[51],"course":[53],"evolution,":[55],"least":[57],"mean":[58],"squares":[59],"(LMS)":[60],"is":[62],"used":[63],"along":[64],"with":[65],"GP.":[67],"apply":[69],"our":[70],"to":[72],"three":[73],"target":[74],"networks":[75],"empirically":[77],"show":[78],"how":[79],"successfully":[80],"GP":[81],"infers":[82],"systems":[84],"equations.":[87]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":10}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
