{"id":"https://openalex.org/W2166611324","doi":"https://doi.org/10.1109/cdc.2005.1582268","title":"Analysis of the Lactose metabolism in E. coli using sum-of-squares decomposition","display_name":"Analysis of the Lactose metabolism in E. coli using sum-of-squares decomposition","publication_year":2006,"publication_date":"2006-10-04","ids":{"openalex":"https://openalex.org/W2166611324","doi":"https://doi.org/10.1109/cdc.2005.1582268","mag":"2166611324"},"language":"en","primary_location":{"id":"doi:10.1109/cdc.2005.1582268","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2005.1582268","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 44th IEEE Conference on Decision and Control","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041763869","display_name":"Ali Ahmadzadeh","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Ahmadzadeh","raw_affiliation_strings":["GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087387014","display_name":"\u00c1d\u00e1m Hal\u00e1sz","orcid":"https://orcid.org/0000-0001-5401-000X"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Halasz","raw_affiliation_strings":["GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087021192","display_name":"Vijay Kumar","orcid":"https://orcid.org/0000-0002-3902-9391"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Kumar","raw_affiliation_strings":["CDS department, Caltech, Pasadena, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CDS department, Caltech, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022400557","display_name":"S. Prajna","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Prajna","raw_affiliation_strings":["GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078288116","display_name":"Ali Jadbabaie","orcid":"https://orcid.org/0000-0003-1122-3069"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Jadbabaie","raw_affiliation_strings":["GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GRASP laboratory, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9745,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.78424606,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"879","last_page":"884"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lactose","display_name":"Lactose","score":0.7432753443717957},{"id":"https://openalex.org/keywords/lac-operon","display_name":"lac operon","score":0.611318051815033},{"id":"https://openalex.org/keywords/steady-state","display_name":"Steady state (chemistry)","score":0.569996178150177},{"id":"https://openalex.org/keywords/operon","display_name":"Operon","score":0.5455727577209473},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.49539339542388916},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.46020975708961487},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.43714970350265503},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.43236929178237915},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.42850568890571594},{"id":"https://openalex.org/keywords/explained-sum-of-squares","display_name":"Explained sum of squares","score":0.4189058542251587},{"id":"https://openalex.org/keywords/control-theory","display_name":"Control theory (sociology)","score":0.3856728971004486},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.32639703154563904},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.25839799642562866},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2358638346195221},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23299288749694824},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22253361344337463},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16140976548194885},{"id":"https://openalex.org/keywords/physical-chemistry","display_name":"Physical chemistry","score":0.08403104543685913}],"concepts":[{"id":"https://openalex.org/C2778724459","wikidata":"https://www.wikidata.org/wiki/Q127900","display_name":"Lactose","level":2,"score":0.7432753443717957},{"id":"https://openalex.org/C170344550","wikidata":"https://www.wikidata.org/wiki/Q311359","display_name":"lac operon","level":4,"score":0.611318051815033},{"id":"https://openalex.org/C8171440","wikidata":"https://www.wikidata.org/wiki/Q903414","display_name":"Steady state (chemistry)","level":2,"score":0.569996178150177},{"id":"https://openalex.org/C203075996","wikidata":"https://www.wikidata.org/wiki/Q139677","display_name":"Operon","level":4,"score":0.5455727577209473},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.49539339542388916},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.46020975708961487},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.43714970350265503},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.43236929178237915},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.42850568890571594},{"id":"https://openalex.org/C49847556","wikidata":"https://www.wikidata.org/wiki/Q3964631","display_name":"Explained sum of squares","level":2,"score":0.4189058542251587},{"id":"https://openalex.org/C47446073","wikidata":"https://www.wikidata.org/wiki/Q5165890","display_name":"Control theory (sociology)","level":3,"score":0.3856728971004486},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.32639703154563904},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.25839799642562866},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2358638346195221},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23299288749694824},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22253361344337463},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16140976548194885},{"id":"https://openalex.org/C147789679","wikidata":"https://www.wikidata.org/wiki/Q11372","display_name":"Physical chemistry","level":1,"score":0.08403104543685913},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cdc.2005.1582268","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cdc.2005.1582268","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 44th IEEE Conference on Decision and Control","raw_type":"proceedings-article"},{"id":"pmh:oai:authors.library.caltech.edu:10818","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/10818/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W244629935","https://openalex.org/W1484198052","https://openalex.org/W1496537269","https://openalex.org/W2064483836","https://openalex.org/W2106850246","https://openalex.org/W2133404041","https://openalex.org/W2167746224","https://openalex.org/W2476606743"],"related_works":["https://openalex.org/W2373125625","https://openalex.org/W2389807217","https://openalex.org/W2363494130","https://openalex.org/W1968089709","https://openalex.org/W1503787245","https://openalex.org/W2356506558","https://openalex.org/W2154035004","https://openalex.org/W2391519299","https://openalex.org/W2383623509","https://openalex.org/W2366166146"],"abstract_inverted_index":{"We":[0,156],"provide":[1,136],"a":[2,47,81,147,165],"system-theoretic":[3],"analysis":[4],"of":[5,9,18,27,34,102,107,110,112,117,125,169,171,190,194],"the":[6,16,22,32,40,73,95,108,113,123,142,153,160,167,172,184,188,191],"mathematical":[7],"model":[8,74,130],"lactose":[10,19,36],"induction":[11,20],"in":[12,51,122,129,152,183],"E.coli":[13],"which":[14,52],"predicts":[15],"level":[17],"into":[21],"cell":[23],"for":[24,99],"specified":[25],"values":[26],"external":[28,35],"lactose.":[29],"Depending":[30],"on":[31],"levels":[33],"and":[37,60,90],"other":[38],"parameters,":[39],"Lac":[41,154],"operon":[42],"is":[43,54,66,163,181],"known":[44],"to":[45,56,68,79,135],"have":[46],"low":[48,173],"steady":[49,62,174],"state":[50,63,97,175],"it":[53,65],"said":[55,67],"be":[57,69,133],"turned":[58,70],"off":[59],"high":[61],"where":[64],"on.":[71],"Furthermore,":[72],"has":[75],"been":[76],"shown":[77],"experimentally":[78],"exhibit":[80],"bi-stable":[82],"behavior.":[83],"Using":[84],"ideas":[85],"from":[86],"Lyapunov":[87],"stability":[88],"theory":[89],"sum-of-squares":[91],"decomposition,":[92],"we":[93,140],"characterize":[94],"reachable":[96],"space":[98],"different":[100],"sets":[101],"initial":[103],"conditions,":[104],"calculating":[105],"estimates":[106],"regions":[109],"attraction":[111,126,170],"biologically":[114],"relevant":[115],"equilibria":[116],"this":[118],"system.":[119],"The":[120],"changes":[121,128],"basins":[124],"with":[127],"parameters":[131],"can":[132],"used":[134],"biological":[137],"insight.":[138],"Specifically,":[139],"explain":[141],"crucial":[143],"role":[144],"played":[145],"by":[146],"small":[148],"basal":[149,161,192],"transcription":[150],"rate":[151,162,193],"operon.":[155],"show":[157],"that":[158,179],"if":[159],"below":[164],"threshold,":[166],"region":[168],"grows":[176],"significantly,":[177],"indicating":[178],"system":[180],"trapped":[182],"(off)":[185],"mode,":[186],"showing":[187],"importance":[189],"transcription.":[195]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
