{"id":"https://openalex.org/W1987515611","doi":"https://doi.org/10.1109/ccgrid.2005.1558667","title":"A grid-based system for microbial genome comparison and analysis","display_name":"A grid-based system for microbial genome comparison and analysis","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W1987515611","doi":"https://doi.org/10.1109/ccgrid.2005.1558667","mag":"1987515611"},"language":"en","primary_location":{"id":"doi:10.1109/ccgrid.2005.1558667","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccgrid.2005.1558667","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101467158","display_name":"Yufang Sun","orcid":"https://orcid.org/0009-0000-1990-5967"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Y. Sun","raw_affiliation_strings":["School of Computing Science, University of Newcastle, UK","Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anil Wipat","raw_affiliation_strings":["School of Computing Science, University of Newcastle, UK","Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109242321","display_name":"Matthew Pocock","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. Pocock","raw_affiliation_strings":["School of Computing Science, University of Newcastle, UK","Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008843960","display_name":"P.A. Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"P.A. Lee","raw_affiliation_strings":["School of Computing Science, University of Newcastle, UK","Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019623844","display_name":"Peter H. Watson","orcid":"https://orcid.org/0000-0002-1642-0638"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"P. Watson","raw_affiliation_strings":["School of Computing Science, University of Newcastle, UK","Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109809868","display_name":"Keith Flanagan","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"K. Flanagan","raw_affiliation_strings":["School of Computing Science, University of Newcastle, UK","Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002036695","display_name":"Jonathan Worthington","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J.T. Worthington","raw_affiliation_strings":["School of Computing Science, University of Newcastle, UK","Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Newcastle upon Tyne Univ., UK","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7584,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.68242128,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"977","last_page":"984 Vol. 2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7716484069824219},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6881576180458069},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6516729593276978},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.581861674785614},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.507897675037384},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.4750121533870697},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.454760879278183},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43553292751312256},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.33629360795021057},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2340838611125946},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1656791865825653},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14291727542877197},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14008668065071106},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.10026019811630249}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7716484069824219},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6881576180458069},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6516729593276978},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.581861674785614},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.507897675037384},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.4750121533870697},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.454760879278183},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43553292751312256},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.33629360795021057},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2340838611125946},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1656791865825653},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14291727542877197},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14008668065071106},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.10026019811630249},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ccgrid.2005.1558667","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ccgrid.2005.1558667","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W186024302","https://openalex.org/W1548843388","https://openalex.org/W1990453950","https://openalex.org/W2002422491","https://openalex.org/W2008290564","https://openalex.org/W2008692528","https://openalex.org/W2059931102","https://openalex.org/W2068787541","https://openalex.org/W2087064593","https://openalex.org/W2107282968","https://openalex.org/W2107523227","https://openalex.org/W2131724426","https://openalex.org/W2133790733","https://openalex.org/W2158714788","https://openalex.org/W2168103533","https://openalex.org/W6665695627"],"related_works":["https://openalex.org/W1824707887","https://openalex.org/W2068583628","https://openalex.org/W169905258","https://openalex.org/W1570043218","https://openalex.org/W3146449452","https://openalex.org/W2162684709","https://openalex.org/W2115770466","https://openalex.org/W2111726532","https://openalex.org/W2083893056","https://openalex.org/W2085955872"],"abstract_inverted_index":{"Genome":[0],"comparison":[1,69,94,116],"and":[2,8,52,70,72,95,106,117],"analysis":[3,30,118],"can":[4],"reveal":[5],"the":[6,33,58,74,78],"structures":[7],"junctions":[9],"of":[10,13,36,77,100],"genome":[11,53,68,93,115,124],"sequences":[12],"different":[14],"species.":[15],"As":[16],"more":[17],"genomes":[18],"are":[19,24],"sequenced,":[20],"genomic":[21,49],"data":[22,50],"sources":[23],"rapidly":[25],"increasing":[26],"such":[27],"that":[28,61],"their":[29],"is":[31,42,62],"beyond":[32],"processing":[34,51],"capabilities":[35],"most":[37],"research":[38],"institutes.":[39],"The":[40],"grid":[41],"a":[43,64,84],"powerful":[44],"solution":[45],"to":[46,88],"support":[47,89,111],"large-scale":[48],"analysis.":[54,125],"This":[55],"paper":[56],"presents":[57],"Microbase":[59,109],"project":[60],"developing":[63],"grid-based":[65],"system":[66,79],"for":[67],"analysis,":[71,96],"discusses":[73],"first":[75],"implementation":[76],"(called":[80],"MicrobaseLite).":[81],"MicrobaseLite":[82],"uses":[83],"scalable":[85],"computing":[86],"environment":[87],"computationally":[90],"intensive":[91],"microbial":[92],"employing":[97],"state-of-the-art":[98],"technologies":[99],"Web":[101],"services,":[102],"notification,":[103],"comparative":[104],"genomics":[105],"parallel":[107],"computing.":[108],"will":[110],"not":[112],"only":[113],"system-defined":[114],"but":[119],"also":[120],"user-defined,":[121],"remotely":[122],"conceived":[123]},"counts_by_year":[{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
