{"id":"https://openalex.org/W4412021480","doi":"https://doi.org/10.1109/cbms65348.2025.00134","title":"Predicting Similarities Between Biomedical Ontologies : The UMLs Use-Case","display_name":"Predicting Similarities Between Biomedical Ontologies : The UMLs Use-Case","publication_year":2025,"publication_date":"2025-06-18","ids":{"openalex":"https://openalex.org/W4412021480","doi":"https://doi.org/10.1109/cbms65348.2025.00134"},"language":"en","primary_location":{"id":"doi:10.1109/cbms65348.2025.00134","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms65348.2025.00134","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 38th International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092761739","display_name":"Safaa Menad","orcid":"https://orcid.org/0009-0009-2204-7786"},"institutions":[{"id":"https://openalex.org/I4210105918","display_name":"Normandie Universit\u00e9","ror":"https://ror.org/01k40cz91","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Safaa Menad","raw_affiliation_strings":["Univ Rouen Normandie, Normandie Univ,Rouen,France,F-76000"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ Rouen Normandie, Normandie Univ,Rouen,France,F-76000","institution_ids":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066934424","display_name":"Sa\u00efd Abdedda\u00efm","orcid":"https://orcid.org/0000-0002-7521-7955"},"institutions":[{"id":"https://openalex.org/I4210105918","display_name":"Normandie Universit\u00e9","ror":"https://ror.org/01k40cz91","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sa\u00efd Abdedda\u00efm","raw_affiliation_strings":["Univ Rouen Normandie, Normandie Univ,Rouen,France,F-76000"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ Rouen Normandie, Normandie Univ,Rouen,France,F-76000","institution_ids":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047697321","display_name":"Lina F. Soualmia","orcid":"https://orcid.org/0000-0001-7668-2819"},"institutions":[{"id":"https://openalex.org/I4210105918","display_name":"Normandie Universit\u00e9","ror":"https://ror.org/01k40cz91","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lina F. Soualmia","raw_affiliation_strings":["Univ Rouen Normandie, Normandie Univ,Rouen,France,F-76000"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ Rouen Normandie, Normandie Univ,Rouen,France,F-76000","institution_ids":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12640289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"648","last_page":"653"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.9271930456161499},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7811764478683472},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5702081918716431},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5612235069274902},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4465057849884033},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41279691457748413}],"concepts":[{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.9271930456161499},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7811764478683472},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5702081918716431},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5612235069274902},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4465057849884033},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41279691457748413},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cbms65348.2025.00134","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms65348.2025.00134","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 38th International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W169919557","https://openalex.org/W1999965082","https://openalex.org/W2063997750","https://openalex.org/W2136410628","https://openalex.org/W2147870804","https://openalex.org/W2183337108","https://openalex.org/W2404369708","https://openalex.org/W2405275595","https://openalex.org/W2803524328","https://openalex.org/W2887535136","https://openalex.org/W2950595506","https://openalex.org/W2963716420","https://openalex.org/W2970641574","https://openalex.org/W2971258845","https://openalex.org/W3046375318","https://openalex.org/W3117041486","https://openalex.org/W3166508187","https://openalex.org/W4224313128","https://openalex.org/W4386469279","https://openalex.org/W4387942588","https://openalex.org/W4388860692","https://openalex.org/W4400975796","https://openalex.org/W4407835674","https://openalex.org/W4407836388","https://openalex.org/W6603694148","https://openalex.org/W6607027582","https://openalex.org/W6713634263","https://openalex.org/W6713841166","https://openalex.org/W6755207826","https://openalex.org/W6773346893"],"related_works":["https://openalex.org/W79619734","https://openalex.org/W2010487328","https://openalex.org/W2003127701","https://openalex.org/W2563868050","https://openalex.org/W1822792362","https://openalex.org/W1507779355","https://openalex.org/W2575181596","https://openalex.org/W2138789621","https://openalex.org/W3204019825","https://openalex.org/W2069107439"],"abstract_inverted_index":{"Biomedical":[0],"ontologies":[1],"are":[2],"crucial":[3],"for":[4],"organizing":[5],"domain-specific":[6],"knowledge,":[7],"yet":[8],"traditional":[9],"alignment":[10,42,98],"methods":[11],"relying":[12],"on":[13],"lexical":[14],"matching":[15],"often":[16],"fail":[17],"to":[18,39,53],"capture":[19],"complex":[20],"semantic":[21,60],"relationships.":[22],"To":[23],"address":[24],"this":[25,72],"limitation,":[26],"we":[27],"propose":[28],"a":[29],"novel":[30],"approach":[31,73],"leveraging":[32],"siamese":[33],"neural":[34],"networks":[35],"and":[36,81,99],"transformerbased":[37],"models":[38,94],"enhance":[40],"ontology":[41,97],"within":[43],"the":[44,57,65,90],"biomedical":[45,54,101],"domain.":[46],"Our":[47],"method":[48],"applies":[49],"self-supervised":[50],"contrastive":[51],"learning":[52],"literature,":[55],"optimizing":[56],"prediction":[58],"of":[59,92],"similarities":[61],"between":[62],"concepts":[63],"in":[64,95],"UMLS":[66,86],"Metathesaurus.":[67],"The":[68],"results":[69],"demonstrate":[70],"that":[71],"surpasses":[74],"lexical-based":[75],"techniques":[76],"by":[77],"identifying":[78],"contextual":[79],"relationships":[80],"uncovering":[82],"new":[83],"interconnections":[84],"among":[85],"terminologies.":[87],"This":[88],"highlights":[89],"potential":[91],"our":[93],"improving":[96],"enriching":[100],"knowledge":[102],"integration.":[103]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
