{"id":"https://openalex.org/W4412021294","doi":"https://doi.org/10.1109/cbms65348.2025.00055","title":"High-Performance Computing-Driven Gene Co-Expression Network Analysis for Biomarkers Discovery in Soft Tissue Sarcomas","display_name":"High-Performance Computing-Driven Gene Co-Expression Network Analysis for Biomarkers Discovery in Soft Tissue Sarcomas","publication_year":2025,"publication_date":"2025-06-18","ids":{"openalex":"https://openalex.org/W4412021294","doi":"https://doi.org/10.1109/cbms65348.2025.00055"},"language":"en","primary_location":{"id":"doi:10.1109/cbms65348.2025.00055","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms65348.2025.00055","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 38th International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5118817764","display_name":"Marc R\u00edos Cadenas","orcid":"https://orcid.org/0009-0002-8400-0114"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Marc R\u00edos Cadenas","raw_affiliation_strings":["Universidad Pablo de Olavide,Intelligent Data Analysis Group (DATAi),Seville,Spain,ES-41013"],"affiliations":[{"raw_affiliation_string":"Universidad Pablo de Olavide,Intelligent Data Analysis Group (DATAi),Seville,Spain,ES-41013","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077542496","display_name":"Aurelio L\u00f3pez L\u00f3pez","orcid":"https://orcid.org/0000-0001-5986-5437"},"institutions":[{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Aurelio L\u00f3pez-Fern\u00e1ndez","raw_affiliation_strings":["University of Seville,Computer Science Department,Seville,Spain,ES-41012"],"affiliations":[{"raw_affiliation_string":"University of Seville,Computer Science Department,Seville,Spain,ES-41012","institution_ids":["https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067223222","display_name":"Francisco G\u00f3mez-Vela","orcid":"https://orcid.org/0000-0001-7376-5790"},"institutions":[{"id":"https://openalex.org/I95013407","display_name":"Universidad Pablo de Olavide","ror":"https://ror.org/02z749649","country_code":"ES","type":"education","lineage":["https://openalex.org/I95013407"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco A. G\u00f3mez-Vela","raw_affiliation_strings":["Universidad Pablo de Olavide,Intelligent Data Analysis Group (DATAi),Seville,Spain,ES-41013"],"affiliations":[{"raw_affiliation_string":"Universidad Pablo de Olavide,Intelligent Data Analysis Group (DATAi),Seville,Spain,ES-41013","institution_ids":["https://openalex.org/I95013407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020398273","display_name":"Juan Antonio Ortega","orcid":"https://orcid.org/0000-0001-9095-7241"},"institutions":[{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan A. Ortega","raw_affiliation_strings":["University of Seville,Computer Science Department,Seville,Spain,ES-41012"],"affiliations":[{"raw_affiliation_string":"University of Seville,Computer Science Department,Seville,Spain,ES-41012","institution_ids":["https://openalex.org/I79238269"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112840169","display_name":"I. Rinc\u00f3n P\u00e9rez","orcid":"https://orcid.org/0009-0002-8971-0369"},"institutions":[{"id":"https://openalex.org/I4210153139","display_name":"Hospital Universitario Virgen del Roc\u00edo","ror":"https://ror.org/04vfhnm78","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210153139"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Inmaculada Rinc\u00f3n P\u00e9rez","raw_affiliation_strings":["University Hospital Virgen del Rocio,Department of Radiation Oncology,Seville,Spain,ES-41013"],"affiliations":[{"raw_affiliation_string":"University Hospital Virgen del Rocio,Department of Radiation Oncology,Seville,Spain,ES-41013","institution_ids":["https://openalex.org/I4210153139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5118817764"],"corresponding_institution_ids":["https://openalex.org/I95013407"],"apc_list":null,"apc_paid":null,"fwci":1.5527,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.84302671,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"234","last_page":"239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10253","display_name":"Sarcoma Diagnosis and Treatment","score":0.9495000243186951,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10253","display_name":"Sarcoma Diagnosis and Treatment","score":0.9495000243186951,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5040232539176941},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4998202323913574},{"id":"https://openalex.org/keywords/soft-computing","display_name":"Soft computing","score":0.45226752758026123},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4282761216163635},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3659971356391907},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2387886345386505},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14324212074279785},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.14210334420204163},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13888099789619446}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5040232539176941},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4998202323913574},{"id":"https://openalex.org/C140073362","wikidata":"https://www.wikidata.org/wiki/Q738759","display_name":"Soft computing","level":3,"score":0.45226752758026123},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4282761216163635},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3659971356391907},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2387886345386505},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14324212074279785},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.14210334420204163},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13888099789619446}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cbms65348.2025.00055","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms65348.2025.00055","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE 38th International Symposium on Computer-Based Medical Systems (CBMS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W2103017472","https://openalex.org/W2159096710","https://openalex.org/W2179438025","https://openalex.org/W2790007951","https://openalex.org/W2987583765","https://openalex.org/W3000734682","https://openalex.org/W3125115489","https://openalex.org/W3133854654","https://openalex.org/W3174792565","https://openalex.org/W3181122834","https://openalex.org/W3203534990","https://openalex.org/W4220903080","https://openalex.org/W4226416243","https://openalex.org/W4283394054","https://openalex.org/W4289277663","https://openalex.org/W4294216483","https://openalex.org/W4303449085","https://openalex.org/W4312140586","https://openalex.org/W4362639192","https://openalex.org/W4378902842","https://openalex.org/W4381598071","https://openalex.org/W4383956169","https://openalex.org/W4387589574","https://openalex.org/W4389144040","https://openalex.org/W4389476964","https://openalex.org/W4391007229","https://openalex.org/W4391027124","https://openalex.org/W4391431502","https://openalex.org/W4392361396","https://openalex.org/W4393279268","https://openalex.org/W4396832393","https://openalex.org/W4400341689","https://openalex.org/W4402574926","https://openalex.org/W4404358504"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4377700919","https://openalex.org/W2095509376","https://openalex.org/W2803323662","https://openalex.org/W3032874291","https://openalex.org/W2005057264","https://openalex.org/W2363156284","https://openalex.org/W2415025170"],"abstract_inverted_index":{"Soft":[0],"tissue":[1],"sarcomas":[2],"(STS),":[3],"such":[4,85],"as":[5,53,58,86],"leiomyosarcoma":[6],"(LMS)":[7],"and":[8,55,88,95,113,125,170],"malignant":[9,122],"peripheral":[10],"nerve":[11],"sheath":[12],"tumors":[13],"(MPNST),":[14],"are":[15,42,62],"aggressive":[16],"neoplasms":[17],"with":[18,108],"limited":[19],"treatment":[20],"alternatives.":[21],"Comprehending":[22],"their":[23,56,126],"biological":[24],"mechanisms":[25],"requires":[26,80],"the":[27,66,72,109,116,152],"examination":[28],"of":[29,68,111,118,160],"gene":[30,47],"expression":[31,136],"data,":[32],"provides":[33],"insights":[34],"into":[35],"transcriptional":[36],"activity.":[37],"Gene":[38],"co-expression":[39,119],"networks":[40,120],"(GCNs)":[41],"essential":[43],"for":[44,65,75,167],"elucidating":[45],"functional":[46],"linkages":[48],"within":[49],"datasets,":[50],"depicting":[51],"genes":[52,133],"nodes":[54],"interactions":[57],"edges.":[59],"Such":[60],"methods":[61],"typically":[63],"employed":[64],"discovery":[67],"potential":[69,105,147],"biomarkers.":[70],"However,":[71],"computational":[73],"performance":[74],"analysing":[76],"huge":[77],"genomic":[78],"datasets":[79],"High-Performance":[81],"Computing":[82],"(HPC)":[83],"technologies,":[84],"GPGPU":[87],"distributed":[89],"computing":[90],"models,":[91],"to":[92,103],"improve":[93],"scalability":[94],"efficiency.":[96],"This":[97,154],"study":[98],"uses":[99],"HPC-based":[100],"GCN":[101],"techniques":[102],"uncover":[104],"biomarkers":[106,148],"associated":[107],"aggressiveness":[110],"LMS":[112],"MPNST.":[114],"Through":[115],"comparison":[117],"from":[121],"tumor":[123],"tissues":[124],"normal":[127],"or":[128],"benign":[129],"counterparts,":[130],"we":[131],"identify":[132],"exhibiting":[134],"differential":[135],"patterns":[137],"that":[138],"may":[139],"facilitate":[140],"sarcoma":[141],"growth.":[142],"As":[143],"a":[144],"result,":[145],"six":[146],"were":[149],"identified":[150],"in":[151],"study.":[153],"holistic":[155],"approach":[156],"improves":[157],"our":[158],"comprehension":[159],"STS":[161],"biology":[162],"while":[163],"providing":[164],"novel":[165],"tools":[166],"biomarker":[168],"identification":[169],"prospective":[171],"therapeutic":[172],"targeting.":[173]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
