{"id":"https://openalex.org/W2108213384","doi":"https://doi.org/10.1109/cbms.2009.5255387","title":"Shared genomics: A platform for emerging interpretation of genetic epidemiology","display_name":"Shared genomics: A platform for emerging interpretation of genetic epidemiology","publication_year":2009,"publication_date":"2009-08-01","ids":{"openalex":"https://openalex.org/W2108213384","doi":"https://doi.org/10.1109/cbms.2009.5255387","mag":"2108213384"},"language":"en","primary_location":{"id":"doi:10.1109/cbms.2009.5255387","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2009.5255387","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 22nd IEEE International Symposium on Computer-Based Medical Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014404477","display_name":"David C. Hoyle","orcid":"https://orcid.org/0000-0003-3483-5885"},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"David Hoyle","raw_affiliation_strings":["North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029762241","display_name":"Mark Delderfield","orcid":null},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Delderfield","raw_affiliation_strings":["North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037936976","display_name":"Lee Kitching","orcid":null},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lee Kitching","raw_affiliation_strings":["North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111427350","display_name":"G. H. Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gareth Smith","raw_affiliation_strings":["North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091179169","display_name":"Peter Crowther","orcid":"https://orcid.org/0000-0002-2222-9418"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peter Crowther","raw_affiliation_strings":["Melandra Limited, UK","Melandra Ltd"],"affiliations":[{"raw_affiliation_string":"Melandra Limited, UK","institution_ids":[]},{"raw_affiliation_string":"Melandra Ltd","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011177296","display_name":"Iain Buchan","orcid":"https://orcid.org/0000-0003-3392-1650"},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Iain Buchan","raw_affiliation_strings":["North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK"],"affiliations":[{"raw_affiliation_string":"North West Institute of BioHealth Informatics, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"North West Institute for BioHealth Informatics, University of Manchester Jean McFarlane Building, University Place, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5014404477"],"corresponding_institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14420456,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"409","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7902424335479736},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7009779810905457},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6978530883789062},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5958205461502075},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5519454479217529},{"id":"https://openalex.org/keywords/statistical-genetics","display_name":"Statistical genetics","score":0.42492926120758057},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.34117019176483154},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.151179701089859},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13810279965400696},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11867094039916992},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10420289635658264}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7902424335479736},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7009779810905457},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6978530883789062},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5958205461502075},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5519454479217529},{"id":"https://openalex.org/C555299818","wikidata":"https://www.wikidata.org/wiki/Q15709513","display_name":"Statistical genetics","level":5,"score":0.42492926120758057},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.34117019176483154},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.151179701089859},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13810279965400696},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11867094039916992},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10420289635658264},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cbms.2009.5255387","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2009.5255387","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 22nd IEEE International Symposium on Computer-Based Medical Systems","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/aea71742-e7d4-4227-866e-71f57c6b6a17","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/aea71742-e7d4-4227-866e-71f57c6b6a17","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hoyle, D, Delderfield, M, Kitching, L, Smith, G, Crowther, P & Buchan, I 2009, Shared genomics: A platform for emerging interpretation of genetic epidemiology. in Proceedings - IEEE Symposium on Computer-Based Medical Systems|Proc. IEEE Symp. Comput.-Based Med. Syst.. IEEE, 2009 22nd IEEE International Symposium on Computer-Based Medical Systems, CBMS 2009, Albuquerque, NM, 1/07/09. https://doi.org/10.1109/CBMS.2009.5255387","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W109453981","https://openalex.org/W1944558458","https://openalex.org/W2061008984","https://openalex.org/W2097660065","https://openalex.org/W2134783591","https://openalex.org/W2159954854","https://openalex.org/W2161633633","https://openalex.org/W2171079026","https://openalex.org/W2172143128"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"The":[0],"study":[1],"of":[2,5,13,46,58,114,124,133,154],"the":[3,11,28,44,51,56,59,63,70,107,111,115,125,150,155],"genetics":[4,93],"diseases":[6],"has":[7],"been":[8],"revolutionised":[9],"by":[10,98,130,158],"advent":[12],"genome-wide":[14,18],"genotyping":[15],"technologies.":[16],"Increasingly,":[17],"association":[19],"studies":[20],"are":[21],"being":[22],"used":[23],"to":[24,74,148],"identify":[25],"positions":[26],"within":[27],"human":[29],"genome":[30],"that":[31],"have":[32],"a":[33,36,86,159],"link":[34],"with":[35,119],"disease":[37],"condition.":[38],"These":[39],"new":[40],"data":[41],"sets":[42],"require":[43],"use":[45,97],"distributed":[47],"resources,":[48],"both":[49],"for":[50,55,69,96],"statistical":[52,71,92,116],"analysis":[53,60,72,94,117,163],"and":[54,152],"interpretation":[57,108],"results.":[61,164],"Aiding":[62],"latter":[64],"will":[65],"be":[66,67,75],"crucial":[68],"process":[73,109],"successful.":[76],"In":[77],"this":[78],"paper":[79],"we":[80,102],"report":[81,103,143],"our":[82],"experiences":[83],"in":[84],"developing":[85,146],"user-friendly":[87],"High":[88],"Performance":[89],"Computing":[90],"(HPC)":[91],"platform":[95],"clinical":[99],"researchers.":[100],"Specifically,":[101],"work":[104,144],"on":[105,145],"supporting":[106],"through":[110],"automatic":[112],"annotation":[113,127],"results":[118],"relevant":[120],"biological":[121,126],"information.":[122],"Retrieval":[123],"is":[128],"performed":[129,157],"high-volume":[131],"invocation":[132],"multiple":[134],"Web-services":[135],"orchestrated":[136],"via":[137],"pre-existing":[138],"scientific":[139],"workflows.":[140],"We":[141],"also":[142],"tools":[147],"aid":[149],"capture":[151],"replay":[153],"processes":[156],"user":[160],"when":[161],"exploring":[162]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
