{"id":"https://openalex.org/W2151522541","doi":"https://doi.org/10.1109/cbms.2009.5255328","title":"On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid","display_name":"On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid","publication_year":2009,"publication_date":"2009-08-01","ids":{"openalex":"https://openalex.org/W2151522541","doi":"https://doi.org/10.1109/cbms.2009.5255328","mag":"2151522541"},"language":"en","primary_location":{"id":"doi:10.1109/cbms.2009.5255328","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2009.5255328","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 22nd IEEE International Symposium on Computer-Based Medical Systems","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013173651","display_name":"Gianluigi Folino","orcid":"https://orcid.org/0000-0002-8139-3445"},"institutions":[{"id":"https://openalex.org/I45204951","display_name":"University of Calabria","ror":"https://ror.org/02rc97e94","country_code":"IT","type":"education","lineage":["https://openalex.org/I45204951"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Gianluigi Folino","raw_affiliation_strings":["CNR-ICAR, University of Calabria, Rende, Cosenza, Italy"],"affiliations":[{"raw_affiliation_string":"CNR-ICAR, University of Calabria, Rende, Cosenza, Italy","institution_ids":["https://openalex.org/I45204951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103753896","display_name":"Azhar Ali Shah","orcid":null},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Azhar Ali Shah","raw_affiliation_strings":["School of Computer Science, University of Nottingham, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Nottingham, UK","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008054394","display_name":"Natalio Kransnogor","orcid":null},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Natalio Kransnogor","raw_affiliation_strings":["School of Computer Science, University of Nottingham, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Nottingham, UK","institution_ids":["https://openalex.org/I142263535"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5013173651"],"corresponding_institution_ids":["https://openalex.org/I45204951"],"apc_list":null,"apc_paid":null,"fwci":0.7251,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.76026996,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"44","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8160030841827393},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6163018941879272},{"id":"https://openalex.org/keywords/relational-database-management-system","display_name":"Relational database management system","score":0.6007131934165955},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5429704785346985},{"id":"https://openalex.org/keywords/sql","display_name":"SQL","score":0.5151501893997192},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.48842301964759827},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4855339527130127},{"id":"https://openalex.org/keywords/oracle","display_name":"Oracle","score":0.4644845128059387},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.4291155934333801},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.321130633354187},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.15526628494262695},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12063971161842346}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8160030841827393},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6163018941879272},{"id":"https://openalex.org/C24394798","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database management system","level":3,"score":0.6007131934165955},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5429704785346985},{"id":"https://openalex.org/C510870499","wikidata":"https://www.wikidata.org/wiki/Q47607","display_name":"SQL","level":2,"score":0.5151501893997192},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.48842301964759827},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4855339527130127},{"id":"https://openalex.org/C55166926","wikidata":"https://www.wikidata.org/wiki/Q2892946","display_name":"Oracle","level":2,"score":0.4644845128059387},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.4291155934333801},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.321130633354187},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.15526628494262695},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12063971161842346},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/cbms.2009.5255328","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2009.5255328","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 22nd IEEE International Symposium on Computer-Based Medical Systems","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.158.8783","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.158.8783","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.nott.ac.uk/~aas/FSK_CBMS2009.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320324730","display_name":"University of Sindh","ror":"https://ror.org/01d692d57"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W28880139","https://openalex.org/W1964941055","https://openalex.org/W2057251215","https://openalex.org/W2068967576","https://openalex.org/W2071843796","https://openalex.org/W2077783617","https://openalex.org/W2083299653","https://openalex.org/W2102245393","https://openalex.org/W2103543285","https://openalex.org/W2119378770","https://openalex.org/W2130479394","https://openalex.org/W2137955461","https://openalex.org/W2143189283","https://openalex.org/W2148101168","https://openalex.org/W2151554142","https://openalex.org/W2152326664","https://openalex.org/W2168211076","https://openalex.org/W2990075684","https://openalex.org/W3142351254","https://openalex.org/W6601190462","https://openalex.org/W6770669002"],"related_works":["https://openalex.org/W568762180","https://openalex.org/W103793412","https://openalex.org/W23253958","https://openalex.org/W2163515254","https://openalex.org/W4242638873","https://openalex.org/W2385034619","https://openalex.org/W1982455124","https://openalex.org/W1988879967","https://openalex.org/W1575529579","https://openalex.org/W3022423983"],"abstract_inverted_index":{"Assessment":[0],"of":[1,8,16,26,29,59,62,69,76,83,85,115,127,150,190],"the":[2,24,60,70,74,81,102,113,124,135,155,162,172],"(Multi)":[3],"Similarity":[4],"among":[5],"a":[6,27,91],"set":[7],"protein":[9,17],"structures":[10],"is":[11,46,95],"achieved":[12],"through":[13,40],"an":[14,98],"ensemble":[15],"structure":[18],"comparison":[19],"methods/algorithms.":[20],"This":[21,64,94],"leads":[22],"to":[23,110],"generation":[25],"multitude":[28],"data":[30,45,191],"that":[31],"varies":[32],"both":[33],"in":[34,49,90,148,171],"type":[35],"and":[36,42,55,105,122,141,174,192],"size.":[37],"After":[38],"passing":[39],"standardization":[41],"normalization,":[43],"this":[44,166],"further":[47],"used":[48,72,130],"consensus":[50],"development;":[51],"providing":[52],"domain":[53],"independent":[54],"highly":[56],"reliable":[57],"view":[58],"assessment":[61],"(di)similarities.":[63],"paper":[65],"briefly":[66],"describes":[67],"some":[68],"techniques":[71],"for":[73,183],"estimation":[75],"missing/invalid":[77],"values":[78],"resulting":[79],"from":[80],"process":[82],"multi-comparison":[84],"very":[86],"large":[87],"scale":[88],"datasets":[89],"distributed/grid":[92],"environment.":[93],"followed":[96],"by":[97],"empirical":[99],"study":[100],"on":[101,154],"storage":[103],"capacity":[104],"query":[106],"processing":[107],"time":[108],"required":[109],"cope":[111],"with":[112],"results":[114],"such":[116,133],"comparisons.":[117],"In":[118],"particular":[119],"we":[120],"investigate":[121],"compare":[123],"storage/query":[125],"overhead":[126],"two":[128],"commonly":[129],"database":[131],"technologies":[132,163],"as":[134],"Hierarchical":[136],"Data":[137],"Format":[138],"(HDF)":[139],"(HDF5)":[140],"Relational":[142],"Database":[143],"Management":[144],"System":[145],"(RDBMS)":[146],"(Oracle/SQL)":[147],"terms":[149],"our":[151,177],"application":[152],"deployed":[153],"National":[156],"Grid":[157],"Service":[158],"(NGS),":[159],"UK.":[160],"As":[161],"explored":[164],"under":[165],"investigation":[167],"are":[168],"quite":[169],"generic":[170],"science":[173],"engineering":[175],"domain,":[176],"findings":[178],"would":[179],"also":[180],"be":[181],"beneficial":[182],"other":[184],"scientific":[185],"applications":[186],"having":[187],"related":[188],"magnitude":[189],"functionality.":[193]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
