{"id":"https://openalex.org/W2133681442","doi":"https://doi.org/10.1109/cbms.2005.29","title":"An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis","display_name":"An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis","publication_year":2005,"publication_date":"2005-07-27","ids":{"openalex":"https://openalex.org/W2133681442","doi":"https://doi.org/10.1109/cbms.2005.29","mag":"2133681442"},"language":"en","primary_location":{"id":"doi:10.1109/cbms.2005.29","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2005.29","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"18th IEEE Symposium on Computer-Based Medical Systems (CBMS'05)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100379058","display_name":"Haiying Wang","orcid":"https://orcid.org/0000-0001-8358-9065"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Haiying Wang","raw_affiliation_strings":["School of Computing and Mathematics, University of Ulster, Jordanstown, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing and Mathematics, University of Ulster, Jordanstown, UK","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050612781","display_name":"Francisco Azuaje","orcid":"https://orcid.org/0000-0002-9207-9072"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"F. Azuaje","raw_affiliation_strings":["School of Computing and Mathematics, University of Ulster, Jordanstown, UK","Sch. of Comput. & Math., Ulster Univ., Jordanstown, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing and Mathematics, University of Ulster, Jordanstown, UK","institution_ids":["https://openalex.org/I138801177"]},{"raw_affiliation_string":"Sch. of Comput. & Math., Ulster Univ., Jordanstown, UK","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073807945","display_name":"Olivier Bodenreider","orcid":"https://orcid.org/0000-0003-4769-4217"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"O. Bodenreider","raw_affiliation_strings":["National Library of Medicine, National Institutes of Health DHHS, Bethesda, USA","National Institutes of Health"],"affiliations":[{"raw_affiliation_string":"National Library of Medicine, National Institutes of Health DHHS, Bethesda, USA","institution_ids":["https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100379058"],"corresponding_institution_ids":["https://openalex.org/I138801177"],"apc_list":null,"apc_paid":null,"fwci":0.9845,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.73873728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"4","issue":null,"first_page":"389","last_page":"394"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8297824859619141},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6849455833435059},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6785475015640259},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6342800855636597},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5631909966468811},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5545628070831299},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5510155558586121},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4351869225502014},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34507596492767334},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32526975870132446},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2945170998573303},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23939678072929382},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2342444360256195},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11769494414329529}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8297824859619141},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6849455833435059},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6785475015640259},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6342800855636597},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5631909966468811},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5545628070831299},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5510155558586121},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4351869225502014},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34507596492767334},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32526975870132446},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2945170998573303},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23939678072929382},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2342444360256195},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11769494414329529},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/cbms.2005.29","is_oa":false,"landing_page_url":"https://doi.org/10.1109/cbms.2005.29","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"18th IEEE Symposium on Computer-Based Medical Systems (CBMS'05)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1535449900","https://openalex.org/W2071581153","https://openalex.org/W2097366050","https://openalex.org/W2103017472","https://openalex.org/W2109047523","https://openalex.org/W2124388496","https://openalex.org/W2127563440","https://openalex.org/W2127938920","https://openalex.org/W2128936012","https://openalex.org/W2150926065","https://openalex.org/W2159328463"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W4298130764","https://openalex.org/W2804364458","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2132641928","https://openalex.org/W4310225030","https://openalex.org/W2090259340","https://openalex.org/W2794019507"],"abstract_inverted_index":{"The":[0],"gene":[1,26],"ontology":[2],"(GO)":[3],"is":[4,42],"an":[5],"important":[6],"knowledge":[7],"resource":[8],"for":[9,83],"biologists":[10],"and":[11,37,93],"bioinformaticians.":[12],"This":[13],"paper":[14],"explores":[15],"the":[16,56,73,81],"integration":[17],"of":[18,72],"similarity":[19,35],"information":[20],"derived":[21],"from":[22],"GO":[23,33],"into":[24],"clustering-based":[25],"expression":[27,38,53],"analysis.":[28],"A":[29],"system":[30],"that":[31],"integrates":[32],"annotations,":[34],"patterns":[36],"data":[39,54,88],"in":[40,91],"yeast":[41],"assessed.":[43],"In":[44],"comparison":[45],"with":[46],"a":[47],"clustering":[48],"model":[49],"based":[50],"only":[51,60],"on":[52],"correlation,":[55],"proposed":[57],"framework":[58],"not":[59],"produces":[61],"consistent":[62],"results,":[63],"but":[64],"also":[65],"it":[66,79],"offers":[67],"alternative,":[68],"potentially":[69],"meaningful":[70],"views":[71],"biological":[74],"problem":[75],"under":[76],"study.":[77],"Moreover,":[78],"provides":[80],"basis":[82],"developing":[84],"other":[85],"automated,":[86],"knowledge-driven":[87],"mining":[89],"systems":[90],"this":[92],"related":[94],"application":[95],"areas.":[96]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}