{"id":"https://openalex.org/W1964624519","doi":"https://doi.org/10.1109/bmei.2012.6512963","title":"Analysis of synonymous codon usage in the UL41 gene of duck plague virus","display_name":"Analysis of synonymous codon usage in the UL41 gene of duck plague virus","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W1964624519","doi":"https://doi.org/10.1109/bmei.2012.6512963","mag":"1964624519"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2012.6512963","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2012.6512963","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 5th International Conference on BioMedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104047495","display_name":"Xuelian Cao","orcid":"https://orcid.org/0009-0008-9584-7154"},"institutions":[{"id":"https://openalex.org/I37574244","display_name":"Sichuan Agricultural University","ror":"https://ror.org/0388c3403","country_code":"CN","type":"education","lineage":["https://openalex.org/I37574244"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuelian Cao","raw_affiliation_strings":["Institute of Preventive Veterinary Medicine Sichuan Agricultural University Cheng du, China","Inst. of Preventive Veterinary Med., Sichuan Agric. Univ., Cheng du, China"],"affiliations":[{"raw_affiliation_string":"Institute of Preventive Veterinary Medicine Sichuan Agricultural University Cheng du, China","institution_ids":["https://openalex.org/I37574244"]},{"raw_affiliation_string":"Inst. of Preventive Veterinary Med., Sichuan Agric. Univ., Cheng du, China","institution_ids":["https://openalex.org/I37574244"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045418032","display_name":"Anchun Cheng","orcid":"https://orcid.org/0000-0001-6093-353X"},"institutions":[{"id":"https://openalex.org/I37574244","display_name":"Sichuan Agricultural University","ror":"https://ror.org/0388c3403","country_code":"CN","type":"education","lineage":["https://openalex.org/I37574244"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Anchun Cheng","raw_affiliation_strings":["Institute of Preventive Veterinary Medicine Sichuan Agricultural University Cheng du, China","Inst. of Preventive Veterinary Med., Sichuan Agric. Univ., Cheng du, China"],"affiliations":[{"raw_affiliation_string":"Institute of Preventive Veterinary Medicine Sichuan Agricultural University Cheng du, China","institution_ids":["https://openalex.org/I37574244"]},{"raw_affiliation_string":"Inst. of Preventive Veterinary Med., Sichuan Agric. Univ., Cheng du, China","institution_ids":["https://openalex.org/I37574244"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102002022","display_name":"Mingshu Wang","orcid":"https://orcid.org/0000-0001-9652-392X"},"institutions":[{"id":"https://openalex.org/I37574244","display_name":"Sichuan Agricultural University","ror":"https://ror.org/0388c3403","country_code":"CN","type":"education","lineage":["https://openalex.org/I37574244"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingshu Wang","raw_affiliation_strings":["Institute of Preventive Veterinary Medicine Sichuan Agricultural University Cheng du, China","Inst. of Preventive Veterinary Med., Sichuan Agric. Univ., Cheng du, China"],"affiliations":[{"raw_affiliation_string":"Institute of Preventive Veterinary Medicine Sichuan Agricultural University Cheng du, China","institution_ids":["https://openalex.org/I37574244"]},{"raw_affiliation_string":"Inst. of Preventive Veterinary Med., Sichuan Agric. Univ., Cheng du, China","institution_ids":["https://openalex.org/I37574244"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5104047495"],"corresponding_institution_ids":["https://openalex.org/I37574244"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04861255,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1153","last_page":"1158"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12477","display_name":"Toxin Mechanisms and Immunotoxins","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"Codon usage bias","score":0.7768916487693787},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6149570941925049},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5271800756454468},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5264242887496948},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.20403292775154114}],"concepts":[{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.7768916487693787},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6149570941925049},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5271800756454468},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5264242887496948},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.20403292775154114}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2012.6512963","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2012.6512963","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 5th International Conference on BioMedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W199759401","https://openalex.org/W1582339379","https://openalex.org/W1710344093","https://openalex.org/W1967287508","https://openalex.org/W1968914986","https://openalex.org/W1969422740","https://openalex.org/W1974260219","https://openalex.org/W1976535324","https://openalex.org/W1984267088","https://openalex.org/W1989529069","https://openalex.org/W1991049350","https://openalex.org/W1994961647","https://openalex.org/W1998603289","https://openalex.org/W2000815952","https://openalex.org/W2003594863","https://openalex.org/W2004146038","https://openalex.org/W2025555859","https://openalex.org/W2028329859","https://openalex.org/W2036778630","https://openalex.org/W2037902594","https://openalex.org/W2040501853","https://openalex.org/W2043334546","https://openalex.org/W2053162921","https://openalex.org/W2061249175","https://openalex.org/W2072284352","https://openalex.org/W2077319392","https://openalex.org/W2082560725","https://openalex.org/W2103609050","https://openalex.org/W2110800489","https://openalex.org/W2114900973","https://openalex.org/W2132644745","https://openalex.org/W2135884205","https://openalex.org/W2136919291","https://openalex.org/W2140261743","https://openalex.org/W2146925484","https://openalex.org/W2150461537","https://openalex.org/W2151632575","https://openalex.org/W2151951677","https://openalex.org/W2153784832","https://openalex.org/W2157130050","https://openalex.org/W2159365979","https://openalex.org/W2160245997","https://openalex.org/W2162430545","https://openalex.org/W2162910042","https://openalex.org/W2164393923","https://openalex.org/W2164876017","https://openalex.org/W2167153903","https://openalex.org/W2168655883","https://openalex.org/W2171859837","https://openalex.org/W2371354124","https://openalex.org/W6684511063","https://openalex.org/W6708656546"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W1966015348","https://openalex.org/W2102511336","https://openalex.org/W2921764584","https://openalex.org/W1866610019"],"abstract_inverted_index":{"The":[0,46],"synonymous":[1,51],"codon":[2,29,60,67,85],"usage":[3,30,64,86,97],"in":[4,65,88],"the":[5,22,50,58,66,79,84,115,127],"UL41":[6,69,89,131],"gene":[7,70],"of":[8,37,68,71,129],"duck":[9],"plague":[10],"virus":[11],"(DPV)":[12],"and":[13,33,55,107,112],"21":[14],"reference":[15],"herpesviruses":[16],"have":[17,62],"been":[18],"investigated":[19],"by":[20],"using":[21],"CodonW":[23],"1.4":[24],"program,":[25],"CUSP":[26],"(create":[27],"a":[28],"table)":[31],"program":[32],"CHIPS(calculated":[34],"ENC":[35],"value)":[36],"EMBOSS":[38],"(The":[39],"European":[40],"Molecular":[41],"Biology":[42],"Open":[43],"Software":[44],"Suite).":[45],"results":[47],"reveals":[48],"that":[49,82],"codons":[52,94],"with":[53,101],"A":[54],"T":[56],"at":[57],"third":[59],"positon":[61],"widely":[63],"DPV.":[72],"G":[73],"+":[74],"C":[75],"compositional":[76],"constraint":[77],"is":[78],"main":[80],"factor":[81],"determines":[83],"bias":[87],"gene.":[90,132],"There":[91],"were":[92],"15":[93],"showing":[95],"distinct":[96],"differences":[98],"between":[99,105,110],"DPV":[100,106,111,130],"Escherichia":[102],"coli,":[103],"17":[104],"yeast,":[108],"29":[109],"Human.":[113],"Therefore":[114],"E.":[116],"coli":[117],"expression":[118,128],"system":[119,122],"or":[120],"yeast":[121],"may":[123],"be":[124],"suitable":[125],"for":[126]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}