{"id":"https://openalex.org/W2031456013","doi":"https://doi.org/10.1109/bmei.2012.6512909","title":"Fast compression of huge DNA sequence data","display_name":"Fast compression of huge DNA sequence data","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W2031456013","doi":"https://doi.org/10.1109/bmei.2012.6512909","mag":"2031456013"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2012.6512909","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2012.6512909","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 5th International Conference on BioMedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021110284","display_name":"Jichao Ouyang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jichao Ouyang","raw_affiliation_strings":["School of Computer Science and Technology, Northwestern Polytechnical University, Xian, Shaanxi, China","Sch. of Comput. Sci. & Technol., Northwestern Polytech. Univ., Xi'an, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Northwestern Polytechnical University, Xian, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Sch. of Comput. Sci. & Technol., Northwestern Polytech. Univ., Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101626761","display_name":"Ping Feng","orcid":"https://orcid.org/0000-0002-3723-5781"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Feng","raw_affiliation_strings":["School of Computer Science and Technology, Northwestern Polytechnical University, Xian, Shaanxi, China","Sch. of Comput. Sci. & Technol., Northwestern Polytech. Univ., Xi'an, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Northwestern Polytechnical University, Xian, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Sch. of Comput. Sci. & Technol., Northwestern Polytech. Univ., Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101134097","display_name":"Kang Ji-chang","orcid":"https://orcid.org/0009-0003-2365-2175"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jichang Kang","raw_affiliation_strings":["School of Computer Science and Technology, Northwestern Polytechnical University, Xian, Shaanxi, China","Sch. of Comput. Sci. & Technol., Northwestern Polytech. Univ., Xi'an, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Northwestern Polytechnical University, Xian, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Sch. of Comput. Sci. & Technol., Northwestern Polytech. Univ., Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5021110284"],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":null,"apc_paid":null,"fwci":0.4281,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.71320288,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"885","last_page":"888"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11321","display_name":"Error Correcting Code Techniques","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7333332300186157},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.7321652770042419},{"id":"https://openalex.org/keywords/compression-ratio","display_name":"Compression ratio","score":0.692524790763855},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6642672419548035},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.6273162364959717},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.5519572496414185},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5063217878341675},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4786042869091034},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4647388458251953},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4445445239543915},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13019749522209167},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10616832971572876},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07498592138290405}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7333332300186157},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.7321652770042419},{"id":"https://openalex.org/C25797200","wikidata":"https://www.wikidata.org/wiki/Q828137","display_name":"Compression ratio","level":3,"score":0.692524790763855},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6642672419548035},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.6273162364959717},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.5519572496414185},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5063217878341675},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4786042869091034},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4647388458251953},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4445445239543915},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13019749522209167},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10616832971572876},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07498592138290405},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C511840579","wikidata":"https://www.wikidata.org/wiki/Q12757","display_name":"Internal combustion engine","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2012.6512909","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2012.6512909","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 5th International Conference on BioMedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320315488","display_name":"ACT Government","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1496422306","https://openalex.org/W1603190194","https://openalex.org/W1970231722","https://openalex.org/W1975965284","https://openalex.org/W2107745473","https://openalex.org/W2112509895","https://openalex.org/W2113649367","https://openalex.org/W2115613939","https://openalex.org/W2147492358","https://openalex.org/W2159084616","https://openalex.org/W2550395266","https://openalex.org/W2612812586","https://openalex.org/W6629764630"],"related_works":["https://openalex.org/W1512321724","https://openalex.org/W4231317009","https://openalex.org/W2367696392","https://openalex.org/W4383723869","https://openalex.org/W4293703255","https://openalex.org/W2161302774","https://openalex.org/W2388481516","https://openalex.org/W2271907651","https://openalex.org/W3007688875","https://openalex.org/W4384298135"],"abstract_inverted_index":{"DNA":[0,11,82],"sequences":[1],"can":[2,26,88],"be":[3],"enormous":[4],"in":[5],"size.":[6],"There":[7],"have":[8],"been":[9],"several":[10,41],"sequence":[12,46,116,128],"oriented":[13],"compression":[14,24,29,83,90],"methods":[15,25],"like":[16],"Biocompress,":[17],"DNACompress,":[18],"Cfact,":[19],"CTW+LZ,":[20],"and":[21],"DNADP.":[22],"These":[23],"achieve":[27,89],"high":[28],"ratio,":[30],"but":[31],"sacrifice":[32],"too":[33],"much":[34],"of":[35,48,92],"time.":[36],"For":[37],"example,":[38],"CTW+LZ":[39],"takes":[40,52,99],"hours":[42],"to":[43,56,111,124,129],"compress":[44,57,112],"a":[45,104,113],"HEMCMVCG":[47],"227":[49],"KB.":[50],"DNADP":[51],"about":[53,100],"20":[54],"minutes":[55],"standard":[58],"benchmark":[59],"sequences.":[60],"Here":[61],"we":[62,119],"introduce":[63],"an":[64],"improved":[65,86],"RLE":[66],"method,":[67],"which":[68],"has":[69],"lower":[70],"computation":[71],"complex.":[72],"Thus,":[73],"it":[74],"significantly":[75],"improves":[76],"the":[77,121,126],"running":[78],"time":[79],"against":[80],"previous":[81],"programs.":[84],"Our":[85],"LRE":[87],"ratio":[91],"1.862":[93],"bits":[94],"per":[95],"base.":[96],"It":[97],"only":[98],"1":[101],"minute":[102],"on":[103],"2.1":[105],"GHz":[106],"Core":[107],"2":[108],"duo":[109],"processor":[110],"250MB":[114],"chromosomes":[115],"file.":[117],"And":[118],"use":[120],"Delta":[122],"Encoding":[123],"reduce":[125],"second":[127],"4.8MB.":[130]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}