{"id":"https://openalex.org/W2049967492","doi":"https://doi.org/10.1109/bmei.2011.6098717","title":"bCloudBLAST: An efficient mapreduce program for bioinformatics applications","display_name":"bCloudBLAST: An efficient mapreduce program for bioinformatics applications","publication_year":2011,"publication_date":"2011-10-01","ids":{"openalex":"https://openalex.org/W2049967492","doi":"https://doi.org/10.1109/bmei.2011.6098717","mag":"2049967492"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2011.6098717","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2011.6098717","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 4th International Conference on Biomedical Engineering and Informatics (BMEI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009519419","display_name":"Zhen Meng","orcid":"https://orcid.org/0000-0001-5756-9159"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhen Meng","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100372615","display_name":"Jianhui Li","orcid":"https://orcid.org/0000-0002-9419-9115"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhui Li","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100828714","display_name":"Yunchun Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunchun Zhou","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453224","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0002-7892-5965"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Liu","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048329712","display_name":"Yong Liu","orcid":"https://orcid.org/0000-0002-8673-8895"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Liu","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103087183","display_name":"Wei Cao","orcid":"https://orcid.org/0000-0003-1620-2419"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210108629","display_name":"Computer Network Information Center","ror":"https://ror.org/01s0wyf50","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210108629"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Cao","raw_affiliation_strings":["Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China"],"affiliations":[{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences (CAS), Beijing, China","institution_ids":["https://openalex.org/I4210108629","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Scientific Data Center, Computer Network Information Center, Chinese Academy of Sciences, 4 Zhongguancun Nansijie, Haidian District, 100190 Beijing, China","institution_ids":["https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5009519419"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210108629"],"apc_list":null,"apc_paid":null,"fwci":0.6514,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.67835566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"2072","last_page":"2076"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8640832901000977},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.7543435096740723},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.7323593497276306},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6741704940795898},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5768199563026428},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.5358717441558838},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4611300528049469},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4508197605609894},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.4362373650074005},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.42294564843177795},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3464964032173157},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2187102735042572}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8640832901000977},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.7543435096740723},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.7323593497276306},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6741704940795898},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5768199563026428},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.5358717441558838},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4611300528049469},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4508197605609894},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.4362373650074005},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.42294564843177795},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3464964032173157},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2187102735042572},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2011.6098717","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2011.6098717","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 4th International Conference on Biomedical Engineering and Informatics (BMEI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W145805655","https://openalex.org/W1582689234","https://openalex.org/W2049649929","https://openalex.org/W2055043387","https://openalex.org/W2078969200","https://openalex.org/W2096041635","https://openalex.org/W2121762798","https://openalex.org/W2131229759","https://openalex.org/W2158714788","https://openalex.org/W2173213060","https://openalex.org/W4236236547","https://openalex.org/W6606052223"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2013643406","https://openalex.org/W2027972911","https://openalex.org/W2157978810","https://openalex.org/W2597809628","https://openalex.org/W2143394857"],"abstract_inverted_index":{"The":[0],"BLAST":[1],"programs":[2],"are":[3],"widely":[4],"used":[5],"tools":[6],"for":[7,13,33],"searching":[8],"protein":[9],"and":[10,30,41,57,62],"DNA":[11],"databases":[12,32],"sequence":[14,28,31,46],"similarities.":[15],"We":[16],"present":[17],"an":[18],"improved":[19],"MapReduce-parallel":[20],"implementation":[21],"by":[22],"splitting":[23],"both":[24],"of":[25],"input":[26],"query":[27],"files":[29],"search,":[34],"called":[35],"bCloudBLAST,":[36],"showing":[37],"very":[38],"good":[39],"scaling":[40],"speedup":[42],"behavior":[43],"on":[44,54],"large":[45],"database.":[47],"bCloudBLAST":[48],"is":[49],"written":[50],"in":[51],"Java,":[52],"executable":[53],"UNIX/Linux,":[55],"Windows":[56],"NacOS":[58],"systems.":[59],"(Free)":[60],"MapReduce":[61],"Hadoop":[63],"libraries":[64],"can":[65],"be":[66],"found":[67],"at":[68],"http://hadoop.apache.org/.":[69],"For":[70],"download:":[71],"http://www.darwintree.cn/tools.htm.":[72]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
