{"id":"https://openalex.org/W2089435683","doi":"https://doi.org/10.1109/bmei.2011.6098238","title":"Comparison of mutual information with a standard method for alignment of histological serial sections","display_name":"Comparison of mutual information with a standard method for alignment of histological serial sections","publication_year":2011,"publication_date":"2011-10-01","ids":{"openalex":"https://openalex.org/W2089435683","doi":"https://doi.org/10.1109/bmei.2011.6098238","mag":"2089435683"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2011.6098238","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2011.6098238","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 4th International Conference on Biomedical Engineering and Informatics (BMEI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://pure.au.dk/ws/files/43939712/1274.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078167954","display_name":"Ying Yu","orcid":"https://orcid.org/0000-0003-2836-3199"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]},{"id":"https://openalex.org/I91656880","display_name":"China Medical University","ror":"https://ror.org/032d4f246","country_code":"CN","type":"education","lineage":["https://openalex.org/I91656880"]}],"countries":["CN","DK"],"is_corresponding":true,"raw_author_name":"Ying Yu","raw_affiliation_strings":["Institute of Anatomy, Aarhus University, Aarhus, Denmark","Department of Biomedical Engineering, China Medical University, Shenyang, China"],"affiliations":[{"raw_affiliation_string":"Institute of Anatomy, Aarhus University, Aarhus, Denmark","institution_ids":["https://openalex.org/I204337017"]},{"raw_affiliation_string":"Department of Biomedical Engineering, China Medical University, Shenyang, China","institution_ids":["https://openalex.org/I91656880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112285932","display_name":"J.E. Assentoft","orcid":null},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]},{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Joergen Erik Assentoft","raw_affiliation_strings":["Institute of Anatomy, Aarhus University, Aarhus, Denmark","Department of Nuclear Medicine & Department of Medical, Physics, Aalborg University Hospital, Aalborg, Denmark"],"affiliations":[{"raw_affiliation_string":"Institute of Anatomy, Aarhus University, Aarhus, Denmark","institution_ids":["https://openalex.org/I204337017"]},{"raw_affiliation_string":"Department of Nuclear Medicine & Department of Medical, Physics, Aalborg University Hospital, Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031432808","display_name":"Jesper Skovhus Thomsen","orcid":"https://orcid.org/0000-0001-9386-6679"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jesper Skovhus Thomsen","raw_affiliation_strings":["Institute of Anatomy, Aarhus University, Aarhus, Denmark"],"affiliations":[{"raw_affiliation_string":"Institute of Anatomy, Aarhus University, Aarhus, Denmark","institution_ids":["https://openalex.org/I204337017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056562596","display_name":"Erik Christensen","orcid":"https://orcid.org/0000-0003-1754-0778"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Erik Ilso Christensen","raw_affiliation_strings":["Institute of Anatomy, Aarhus University, Aarhus, Denmark"],"affiliations":[{"raw_affiliation_string":"Institute of Anatomy, Aarhus University, Aarhus, Denmark","institution_ids":["https://openalex.org/I204337017"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035890092","display_name":"Arne Andreasen","orcid":"https://orcid.org/0000-0002-2160-591X"},"institutions":[{"id":"https://openalex.org/I204337017","display_name":"Aarhus University","ror":"https://ror.org/01aj84f44","country_code":"DK","type":"education","lineage":["https://openalex.org/I204337017"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Arne Andreasen","raw_affiliation_strings":["Institute of Anatomy, Aarhus University, Aarhus, Denmark"],"affiliations":[{"raw_affiliation_string":"Institute of Anatomy, Aarhus University, Aarhus, Denmark","institution_ids":["https://openalex.org/I204337017"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5078167954"],"corresponding_institution_ids":["https://openalex.org/I204337017","https://openalex.org/I91656880"],"apc_list":null,"apc_paid":null,"fwci":0.2614,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.59535785,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"1","issue":null,"first_page":"201","last_page":"205"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10231","display_name":"Pancreatic and Hepatic Oncology Research","score":0.9702000021934509,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6097150444984436},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.5981026887893677},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.5801569223403931},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48622122406959534},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4835743308067322},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46040499210357666},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.4391050934791565},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.41374823451042175},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.39089152216911316}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6097150444984436},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.5981026887893677},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.5801569223403931},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48622122406959534},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4835743308067322},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46040499210357666},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.4391050934791565},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.41374823451042175},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.39089152216911316},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bmei.2011.6098238","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2011.6098238","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 4th International Conference on Biomedical Engineering and Informatics (BMEI)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.atira.dk:openaire/4d8a97a8-f1cb-4b2a-839f-2bd49bc22b80","is_oa":true,"landing_page_url":"https://pure.au.dk/portal/en/publications/4d8a97a8-f1cb-4b2a-839f-2bd49bc22b80","pdf_url":"https://pure.au.dk/ws/files/43939712/1274.pdf","source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Yu, Y, Assentoft, J E, Thomsen, J S, Christensen, E I & Andreasen, A 2011, Comparison of Mutual Information with a Standard Method for Alignment of Histological Serial Sections. in Proceedings of 4th International Conference on Biomedical Engineering and Informatics . pp. 204-7.","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:pure.atira.dk:openaire/4d8a97a8-f1cb-4b2a-839f-2bd49bc22b80","is_oa":true,"landing_page_url":"https://pure.au.dk/portal/en/publications/4d8a97a8-f1cb-4b2a-839f-2bd49bc22b80","pdf_url":"https://pure.au.dk/ws/files/43939712/1274.pdf","source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Yu, Y, Assentoft, J E, Thomsen, J S, Christensen, E I & Andreasen, A 2011, Comparison of Mutual Information with a Standard Method for Alignment of Histological Serial Sections. in Proceedings of 4th International Conference on Biomedical Engineering and Informatics . pp. 204-7.","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2089435683.pdf","grobid_xml":"https://content.openalex.org/works/W2089435683.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1874027545","https://openalex.org/W1963560571","https://openalex.org/W2010613612","https://openalex.org/W2041125622","https://openalex.org/W2093057354","https://openalex.org/W2116700856","https://openalex.org/W2122373806","https://openalex.org/W2147377831","https://openalex.org/W2149624048","https://openalex.org/W2155157029","https://openalex.org/W2170509487","https://openalex.org/W6681839513"],"related_works":["https://openalex.org/W2466816617","https://openalex.org/W1970834875","https://openalex.org/W842936808","https://openalex.org/W3174028392","https://openalex.org/W2000517284","https://openalex.org/W3101578490","https://openalex.org/W4213477128","https://openalex.org/W4287300272","https://openalex.org/W3134797699","https://openalex.org/W2304716576"],"abstract_inverted_index":{"The":[0,28,60,76],"purpose":[1],"of":[2,10,17,24,62,78,95,106],"the":[3,8,45,63,134,145,157,164,169],"study":[4],"was":[5,65,149],"to":[6,21,66,131,138,151,162],"compare":[7],"ability":[9],"a":[11,18,38,73,92,99,103,109],"mutual":[12,56],"information":[13,57],"algorithm":[14,20],"with":[15,140],"that":[16,126,144],"standard":[19,53],"align":[22,30,67,132,139,152,163],"images":[23,155,167],"histological":[25],"serial":[26,69,113],"sections.":[27],"two":[29],"algorithms":[31,43],"were":[32,129,136],"implemented":[33],"in":[34],"C":[35],"running":[36],"on":[37],"Linux":[39],"based":[40],"PC.":[41],"Both":[42],"used":[44],"same":[46],"gradient-based":[47],"optimizer,":[48],"but":[49],"different":[50],"cost":[51],"functions":[52],"(ST),":[54],"and":[55,160],"(MI)":[58],"respectively.":[59],"object":[61],"test":[64,119],"4557":[68,154],"sections":[70,80,85,115],"originating":[71],"from":[72],"rat":[74],"kidney.":[75],"alignment":[77],"kidney":[79,114],"is":[81,102],"difficult":[82,130],"as":[83],"these":[84],"contain":[86],"many":[87],"nearly":[88],"identical":[89],"tubules,":[90],"representing":[91],"high":[93],"degree":[94],"translation":[96],"symmetry.":[97],"As":[98],"consequence":[100],"there":[101],"non-negligible":[104],"chance":[105],"misalignment":[107],"into":[108],"local":[110],"minimum,":[111],"making":[112],"good":[116],"real":[117],"life":[118],"objects":[120],"for":[121],"image":[122],"alignment.":[123],"We":[124,142],"showed":[125],"images,":[127],"which":[128],"by":[133],"ST":[135,158],"easy":[137],"MI.":[141],"found":[143],"most":[146],"efficient":[147],"strategy":[148],"first":[150],"all":[153],"using":[156,168],"function":[159],"then":[161],"misaligned":[165],"54":[166],"MI":[170],"function.":[171]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
