{"id":"https://openalex.org/W2136919291","doi":"https://doi.org/10.1109/bmei.2009.5305044","title":"Analysis of Synonymous Codon Usage in the UL26.5 Gene of Duck Enteritis Virus","display_name":"Analysis of Synonymous Codon Usage in the UL26.5 Gene of Duck Enteritis Virus","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2136919291","doi":"https://doi.org/10.1109/bmei.2009.5305044","mag":"2136919291"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2009.5305044","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5305044","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100447016","display_name":"Yao Zhang","orcid":"https://orcid.org/0000-0003-3853-3550"},"institutions":[{"id":"https://openalex.org/I37574244","display_name":"Sichuan Agricultural University","ror":"https://ror.org/0388c3403","country_code":"CN","type":"education","lineage":["https://openalex.org/I37574244"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yao Zhang","raw_affiliation_strings":["Avian Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China","Avian Disease Res. Center, Sichuan Agric. Univ., Ya'an, China"],"affiliations":[{"raw_affiliation_string":"Avian Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China","institution_ids":["https://openalex.org/I37574244"]},{"raw_affiliation_string":"Avian Disease Res. Center, Sichuan Agric. Univ., Ya'an, China","institution_ids":["https://openalex.org/I37574244"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045418032","display_name":"Anchun Cheng","orcid":"https://orcid.org/0000-0001-6093-353X"},"institutions":[{"id":"https://openalex.org/I37574244","display_name":"Sichuan Agricultural University","ror":"https://ror.org/0388c3403","country_code":"CN","type":"education","lineage":["https://openalex.org/I37574244"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Anchun Cheng","raw_affiliation_strings":["Avian Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China","Avian Disease Res. Center, Sichuan Agric. Univ., Ya'an, China"],"affiliations":[{"raw_affiliation_string":"Avian Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China","institution_ids":["https://openalex.org/I37574244"]},{"raw_affiliation_string":"Avian Disease Res. Center, Sichuan Agric. Univ., Ya'an, China","institution_ids":["https://openalex.org/I37574244"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102002022","display_name":"Mingshu Wang","orcid":"https://orcid.org/0000-0001-9652-392X"},"institutions":[{"id":"https://openalex.org/I37574244","display_name":"Sichuan Agricultural University","ror":"https://ror.org/0388c3403","country_code":"CN","type":"education","lineage":["https://openalex.org/I37574244"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingshu Wang","raw_affiliation_strings":["Avian Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China","Avian Disease Res. Center, Sichuan Agric. Univ., Ya'an, China"],"affiliations":[{"raw_affiliation_string":"Avian Disease Research Center, College of Veterinary Medicine, Sichuan Agricultural University, Yaan, China","institution_ids":["https://openalex.org/I37574244"]},{"raw_affiliation_string":"Avian Disease Res. Center, Sichuan Agric. Univ., Ya'an, China","institution_ids":["https://openalex.org/I37574244"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076996063","display_name":"Dekang Zhu","orcid":"https://orcid.org/0000-0002-7314-1088"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dekang Zhu","raw_affiliation_strings":["Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China"],"affiliations":[{"raw_affiliation_string":"Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064308879","display_name":"Renyong Jia","orcid":"https://orcid.org/0000-0002-3539-9184"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Renyong Jia","raw_affiliation_strings":["Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China"],"affiliations":[{"raw_affiliation_string":"Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394689","display_name":"Fei Liu","orcid":"https://orcid.org/0000-0003-2811-9479"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fei Liu","raw_affiliation_strings":["Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China"],"affiliations":[{"raw_affiliation_string":"Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105988307","display_name":"Xiaoyue Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xiaoyue Chen","raw_affiliation_strings":["Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China"],"affiliations":[{"raw_affiliation_string":"Key Lab. of Animal Diseases & Human Health of Sichuan Province, Ya'an, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100447016"],"corresponding_institution_ids":["https://openalex.org/I37574244"],"apc_list":null,"apc_paid":null,"fwci":0.7874,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.71788287,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"81","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11112","display_name":"Viral Infections and Immunology Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"Codon usage bias","score":0.7542731761932373},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6796950697898865},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.640641987323761},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5795909762382507},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4462689459323883},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34810367226600647},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1719532608985901}],"concepts":[{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.7542731761932373},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6796950697898865},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.640641987323761},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5795909762382507},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4462689459323883},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34810367226600647},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1719532608985901}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2009.5305044","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5305044","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1242999800","https://openalex.org/W1499615242","https://openalex.org/W1628209714","https://openalex.org/W1866610019","https://openalex.org/W1945308210","https://openalex.org/W1946405305","https://openalex.org/W1966773394","https://openalex.org/W1969422740","https://openalex.org/W1974260219","https://openalex.org/W1991141629","https://openalex.org/W2002050494","https://openalex.org/W2002989021","https://openalex.org/W2004146038","https://openalex.org/W2006737337","https://openalex.org/W2017526934","https://openalex.org/W2018097321","https://openalex.org/W2039209896","https://openalex.org/W2043334546","https://openalex.org/W2044268383","https://openalex.org/W2053751169","https://openalex.org/W2070163065","https://openalex.org/W2072499238","https://openalex.org/W2081747108","https://openalex.org/W2089434733","https://openalex.org/W2092240624","https://openalex.org/W2100002703","https://openalex.org/W2100352133","https://openalex.org/W2104593237","https://openalex.org/W2114900973","https://openalex.org/W2116815453","https://openalex.org/W2133238953","https://openalex.org/W2140261743","https://openalex.org/W2143026547","https://openalex.org/W2151632575","https://openalex.org/W2159307922","https://openalex.org/W2167153903","https://openalex.org/W2168655883","https://openalex.org/W2414473029"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W1966015348","https://openalex.org/W2102511336","https://openalex.org/W2921764584","https://openalex.org/W1866610019","https://openalex.org/W2803323662","https://openalex.org/W3032874291","https://openalex.org/W2005057264","https://openalex.org/W2363156284","https://openalex.org/W2415025170"],"abstract_inverted_index":{"The":[0,66,111],"analysis":[1,113],"on":[2],"codon":[3,50,80,87,105],"usage":[4,51,84,106,135],"bias":[5,107],"of":[6,9,24,37,56,88,91,169],"UL26.5":[7,54,89,109,171],"gene":[8,55,90,172],"duck":[10],"enteritis":[11],"virus":[12],"(DEV)":[13],"may":[14,163],"provide":[15],"a":[16],"basis":[17],"for":[18,27,166],"understanding":[19],"the":[20,35,48,53,70,78,86,99,104,156,167],"evolution":[21],"and":[22,26,42,58,75,142,147,153,158],"pathogenesis":[23],"DEV":[25,57,116,138,146,152,170],"selecting":[28],"appropriate":[29],"host":[30],"expression":[31,36,161,168],"systems":[32],"to":[33,120],"improve":[34],"target":[38],"genes":[39],"in":[40,43,52,85,108],"vivo":[41],"vitro.":[44],"In":[45],"this":[46],"study,":[47],"synonymous":[49,71],"27":[59],"reference":[60],"herpesviruses":[61,122],"have":[62,82],"been":[63],"investigated":[64],".":[65],"results":[67],"reveals":[68],"that":[69,102,115],"codons":[72,132,175],"with":[73,139],"A":[74],"T":[76],"at":[77],"third":[79],"positon":[81],"widely":[83],"DEV.":[92],"G":[93],"+":[94],"C":[95],"compositional":[96],"constraint":[97],"is":[98],"main":[100],"factor":[101],"determines":[103],"gene.":[110],"phylogentic":[112],"suggested":[114],"was":[117],"evolutionarily":[118],"closer":[119],"fowl":[121],"which":[123],"further":[124],"clustered":[125],"into":[126],"Alphaherpesvirinae.":[127],"There":[128],"were":[129],"both":[130],"21":[131],"showing":[133],"distinct":[134],"differences":[136],"between":[137,145,151],"Escherichia":[140],"coli":[141,160],"yeast,":[143],"25":[144],"Homo":[148],"sapiens,":[149],"26":[150],"adenovirus.":[154],"Therefore":[155],"yeast":[157],"E.":[159],"system":[162],"be":[164,177],"suitable":[165],"if":[173],"some":[174],"could":[176],"optimized.":[178]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}