{"id":"https://openalex.org/W2172230416","doi":"https://doi.org/10.1109/bmei.2009.5302670","title":"An Efficient Approach for Flexible Docking Base on Particle Swarm Optimization","display_name":"An Efficient Approach for Flexible Docking Base on Particle Swarm Optimization","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2172230416","doi":"https://doi.org/10.1109/bmei.2009.5302670","mag":"2172230416"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2009.5302670","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5302670","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100345803","display_name":"Yu Liu","orcid":"https://orcid.org/0000-0002-6003-9121"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yu Liu","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451412","display_name":"Wentao Li","orcid":"https://orcid.org/0000-0002-7777-0818"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wentao Li","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100431061","display_name":"Yongliang Wang","orcid":"https://orcid.org/0000-0003-3887-9500"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongliang Wang","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069552625","display_name":"Mingwei Lv","orcid":"https://orcid.org/0009-0003-6065-6052"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingwei Lv","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100345803"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.3428,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.64505875,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10274","display_name":"Synthesis and biological activity","score":0.9711999893188477,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.9498336315155029},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7346041202545166},{"id":"https://openalex.org/keywords/particle-swarm-optimization","display_name":"Particle swarm optimization","score":0.70423424243927},{"id":"https://openalex.org/keywords/dock","display_name":"DOCK","score":0.6737635731697083},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.6523597240447998},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6401030421257019},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.48777347803115845},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.46646201610565186},{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.437669038772583},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.4303654730319977},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30766570568084717},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2878569960594177},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.267094224691391},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1510259509086609},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1396992802619934},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.10036799311637878}],"concepts":[{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.9498336315155029},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7346041202545166},{"id":"https://openalex.org/C85617194","wikidata":"https://www.wikidata.org/wiki/Q2072794","display_name":"Particle swarm optimization","level":2,"score":0.70423424243927},{"id":"https://openalex.org/C93073132","wikidata":"https://www.wikidata.org/wiki/Q24726581","display_name":"DOCK","level":2,"score":0.6737635731697083},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.6523597240447998},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6401030421257019},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.48777347803115845},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.46646201610565186},{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.437669038772583},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.4303654730319977},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30766570568084717},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2878569960594177},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.267094224691391},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1510259509086609},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1396992802619934},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.10036799311637878},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2009.5302670","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5302670","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.8600000143051147,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1594539819","https://openalex.org/W2003536416","https://openalex.org/W2019750793","https://openalex.org/W2024106670","https://openalex.org/W2139339670","https://openalex.org/W2152195021","https://openalex.org/W2158534713","https://openalex.org/W2167041509","https://openalex.org/W2402846924"],"related_works":["https://openalex.org/W2089188080","https://openalex.org/W2167041509","https://openalex.org/W2150931400","https://openalex.org/W2020084080","https://openalex.org/W2109587698","https://openalex.org/W3200294295","https://openalex.org/W4210495387","https://openalex.org/W2336040088","https://openalex.org/W2149658535","https://openalex.org/W4322500885"],"abstract_inverted_index":{"Molecular":[0],"docking":[1,13,22,78,88,175],"is":[2,15,106,121,165,170],"an":[3,171],"important":[4],"tool":[5],"in":[6,70,136,184],"identifying":[7],"potential":[8],"drug":[9],"candidates.":[10],"The":[11,84],"molecular":[12],"problem":[14,37],"to":[16,24,76,123,187],"find":[17],"a":[18,25,34,40,44,50,73,140,144],"good":[19],"conformation":[20],"for":[21,114],"ligand":[23],"large":[26],"receptor":[27],"molecule.":[28],"It":[29],"can":[30,181],"be":[31,182],"formulated":[32],"as":[33],"parameter":[35],"optimization":[36,46],"consisting":[38],"of":[39,52,90,101,118,138],"scoring":[41],"function":[42],"and":[43,63,87,98,125,150,162,173,177],"global":[45],"method.":[47],"Based":[48],"on":[49],"variant":[51],"Particle":[53,60],"Swarm":[54,61],"Optimization":[55],"(PSO)":[56],"named":[57],"Fully":[58],"Informed":[59],"(FIPS)":[62],"the":[64,99,115,154,185],"semiempirical":[65],"free":[66],"energy":[67],"force":[68,116],"field":[69,117],"AutoDock":[71,124,133],"4.0,":[72],"new":[74],"approach":[75],"flexible":[77],"method":[79,176],"called":[80],"FIPSDock":[81,91,120,164,169],"was":[82,128],"implemented.":[83],"search":[85],"ability":[86],"accuracy":[89],"were":[92],"evaluated":[93],"by":[94,131],"multiple":[95],"redocking":[96],"experiments,":[97],"results":[100],"which":[102,127],"demonstrate":[103],"that":[104],"FIPS":[105],"more":[107,166],"suitable":[108],"than":[109],"Lamarckian":[110],"Genetic":[111],"Algorithm":[112],"(LGA)":[113],"AutoDock.":[119],"superior":[122],"SODOCK":[126],"also":[129],"proposed":[130],"improving":[132],"with":[134,153],"PSO":[135],"term":[137],"obtaining":[139],"lower":[141],"binding":[142],"energy,":[143],"better":[145],"docked":[146],"conformation,":[147],"convergence":[148],"speed":[149],"robustness.":[151],"Compared":[152],"four":[155],"currently":[156],"widely":[157],"used":[158],"methods-GOLD,":[159],"DOCK,":[160],"FlexX":[161],"AutoDock,":[163],"accurate.":[167],"Thus,":[168],"efficient":[172],"accurate":[174],"its":[178],"promising":[179],"prospects":[180],"expected":[183],"application":[186],"virtual":[188],"screening.":[189]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
