{"id":"https://openalex.org/W2141182814","doi":"https://doi.org/10.1109/bmei.2009.5302220","title":"Extracting Protein-Protein Interaction from Biomedical Text Using Additional Shallow Parsing Information","display_name":"Extracting Protein-Protein Interaction from Biomedical Text Using Additional Shallow Parsing Information","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W2141182814","doi":"https://doi.org/10.1109/bmei.2009.5302220","mag":"2141182814"},"language":"en","primary_location":{"id":"doi:10.1109/bmei.2009.5302220","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5302220","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086971619","display_name":"Huanhuan Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huanhuan Yu","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006678542","display_name":"Longhua Qian","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longhua Qian","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012794465","display_name":"Guodong Zhou","orcid":"https://orcid.org/0000-0002-7887-5099"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guodong Zhou","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102065469","display_name":"Qiaoming Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiaoming Zhu","raw_affiliation_strings":["Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Jiangsu Provincial Key Laboratory of Computer Information Processing Technology, School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]},{"raw_affiliation_string":"Jiangsu Provincial Key Lab. for Comput. Inf. Process. Technol., Soochow Univ., Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086971619"],"corresponding_institution_ids":["https://openalex.org/I3923682"],"apc_list":null,"apc_paid":null,"fwci":0.2625,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59692338,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"319","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.972100019454956,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7847890853881836},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7351981401443481},{"id":"https://openalex.org/keywords/chunking","display_name":"Chunking (psychology)","score":0.7036439180374146},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6407015323638916},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.6190917491912842},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.5242974162101746},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5214694738388062},{"id":"https://openalex.org/keywords/phrase","display_name":"Phrase","score":0.49297547340393066},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43398547172546387},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3903684914112091}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7847890853881836},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7351981401443481},{"id":"https://openalex.org/C203357204","wikidata":"https://www.wikidata.org/wiki/Q1089605","display_name":"Chunking (psychology)","level":2,"score":0.7036439180374146},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6407015323638916},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.6190917491912842},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.5242974162101746},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5214694738388062},{"id":"https://openalex.org/C2776224158","wikidata":"https://www.wikidata.org/wiki/Q187931","display_name":"Phrase","level":2,"score":0.49297547340393066},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43398547172546387},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3903684914112091},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bmei.2009.5302220","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bmei.2009.5302220","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 2nd International Conference on Biomedical Engineering and Informatics","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6899999976158142,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W151685798","https://openalex.org/W1493270114","https://openalex.org/W1580184797","https://openalex.org/W1604685658","https://openalex.org/W1691537300","https://openalex.org/W1968920591","https://openalex.org/W1987170279","https://openalex.org/W2016928406","https://openalex.org/W2029304247","https://openalex.org/W2038564898","https://openalex.org/W2053238041","https://openalex.org/W2071378251","https://openalex.org/W2092654472","https://openalex.org/W2109070394","https://openalex.org/W2139259976","https://openalex.org/W2148603752","https://openalex.org/W2152698860","https://openalex.org/W2160238006","https://openalex.org/W2163362093","https://openalex.org/W2166474856","https://openalex.org/W4234806381","https://openalex.org/W6629460809","https://openalex.org/W6636363920","https://openalex.org/W6637284365","https://openalex.org/W6682425626"],"related_works":["https://openalex.org/W2384729545","https://openalex.org/W2198395236","https://openalex.org/W2800417007","https://openalex.org/W147604216","https://openalex.org/W2161080928","https://openalex.org/W2118525872","https://openalex.org/W2279104074","https://openalex.org/W4360764637","https://openalex.org/W2907675665","https://openalex.org/W2010807697"],"abstract_inverted_index":{"This":[0],"paper":[1],"explores":[2],"protein-protein":[3],"interaction":[4],"extraction":[5],"from":[6],"biomedical":[7],"literature":[8],"using":[9],"support":[10],"vector":[11],"machines":[12],"(SVM).":[13],"Besides":[14],"common":[15],"lexical":[16],"features,":[17],"various":[18],"overlap":[19],"features":[20],"and":[21,48,56],"base":[22],"phrase":[23],"chunking":[24],"information":[25],"are":[26,62],"used":[27],"to":[28],"improve":[29],"the":[30,34],"performance.":[31],"Evaluation":[32],"on":[33],"AIMed":[35],"corpus":[36],"shows":[37],"that":[38],"our":[39],"feature-based":[40,67],"method":[41],"achieves":[42],"very":[43],"encouraging":[44],"performances":[45],"of":[46],"68.6":[47],"51.0":[49],"in":[50],"F-measure":[51],"with":[52,64],"10-fold":[53,57],"pair-wise":[54],"cross-validation":[55,59],"document-wise":[58],"respectively,":[60],"which":[61],"comparable":[63],"other":[65],"state-of-the-art":[66],"methods.":[68]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
