{"id":"https://openalex.org/W4408202404","doi":"https://doi.org/10.1109/bigdata62323.2024.10910113","title":"Optimizing Rare Disease Patient Matching with Large Language Models","display_name":"Optimizing Rare Disease Patient Matching with Large Language Models","publication_year":2024,"publication_date":"2024-12-15","ids":{"openalex":"https://openalex.org/W4408202404","doi":"https://doi.org/10.1109/bigdata62323.2024.10910113"},"language":"en","primary_location":{"id":"doi:10.1109/bigdata62323.2024.10910113","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10910113","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102998018","display_name":"Armin Berger","orcid":"https://orcid.org/0009-0003-1924-8401"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Armin Berger","raw_affiliation_strings":["Fraunhofer IAIS,Department of Media Engineering,Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS,Department of Media Engineering,Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014550117","display_name":"Ali Hamza Bashir","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ali Hamza Bashir","raw_affiliation_strings":["University of Bonn,Department of Computer Science,Germany"],"affiliations":[{"raw_affiliation_string":"University of Bonn,Department of Computer Science,Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030431841","display_name":"David Berghaus","orcid":"https://orcid.org/0000-0002-0740-154X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Berghaus","raw_affiliation_strings":["Fraunhofer IAIS,Department of Media Engineering,Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS,Department of Media Engineering,Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116540629","display_name":"Mowmita","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mowmita","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116540630","display_name":"Nazia Afsan","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nazia Afsan","raw_affiliation_strings":["University of Bonn,Department of Computer Science,Germany"],"affiliations":[{"raw_affiliation_string":"University of Bonn,Department of Computer Science,Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024722052","display_name":"Lorenz Grigull","orcid":"https://orcid.org/0000-0001-8807-2874"},"institutions":[{"id":"https://openalex.org/I2799391451","display_name":"University Hospital Bonn","ror":"https://ror.org/01xnwqx93","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799391451"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lorenz Grigull","raw_affiliation_strings":["University Hospital Bonn,Center for Rare Diseases,Germany"],"affiliations":[{"raw_affiliation_string":"University Hospital Bonn,Center for Rare Diseases,Germany","institution_ids":["https://openalex.org/I2799391451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115904452","display_name":"Lara Fendrich","orcid":"https://orcid.org/0000-0002-8063-0373"},"institutions":[{"id":"https://openalex.org/I2799391451","display_name":"University Hospital Bonn","ror":"https://ror.org/01xnwqx93","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799391451"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lara Fendrich","raw_affiliation_strings":["University Hospital Bonn,Center for Rare Diseases,Germany"],"affiliations":[{"raw_affiliation_string":"University Hospital Bonn,Center for Rare Diseases,Germany","institution_ids":["https://openalex.org/I2799391451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056432490","display_name":"Hubert H\u00f6gl","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Henriette H\u00f6gl","raw_affiliation_strings":["Children&#x0027;s Network for Chronic Illnesses and Disabilities,Germany"],"affiliations":[{"raw_affiliation_string":"Children&#x0027;s Network for Chronic Illnesses and Disabilities,Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108620260","display_name":"Gundula Ernst","orcid":"https://orcid.org/0000-0002-2483-7206"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gundula Ernst","raw_affiliation_strings":["Medical School Hannover,Department of Medical Psychology,Germany"],"affiliations":[{"raw_affiliation_string":"Medical School Hannover,Department of Medical Psychology,Germany","institution_ids":["https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108470466","display_name":"Ralf Schmidt","orcid":"https://orcid.org/0000-0002-1224-2678"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ralf Schmidt","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115904451","display_name":"David Bascom","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Bascom","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115904453","display_name":"Tom Anglim Lagones","orcid":null},"institutions":[{"id":"https://openalex.org/I2800882159","display_name":"Government of Western Australia Department of Health","ror":"https://ror.org/01epcny94","country_code":"AU","type":"government","lineage":["https://openalex.org/I2799506148","https://openalex.org/I2800882159"]},{"id":"https://openalex.org/I1302211766","display_name":"Queensland Health","ror":"https://ror.org/00c1dt378","country_code":"AU","type":"government","lineage":["https://openalex.org/I1302211766","https://openalex.org/I2801244131"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tom Anglim Lagones","raw_affiliation_strings":["Department of Health Queensland,Australia"],"affiliations":[{"raw_affiliation_string":"Department of Health Queensland,Australia","institution_ids":["https://openalex.org/I1302211766","https://openalex.org/I2800882159"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003368121","display_name":"Tobias Deu\u00dfer","orcid":"https://orcid.org/0000-0003-4685-0847"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tobias Deu\u00dfer","raw_affiliation_strings":["Fraunhofer IAIS,Department of Media Engineering,Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS,Department of Media Engineering,Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110721074","display_name":"Thiago Bell","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thiago Bell","raw_affiliation_strings":["Fraunhofer IAIS,Department of Media Engineering,Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS,Department of Media Engineering,Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039510770","display_name":"Max L\u00fcbbering","orcid":"https://orcid.org/0000-0001-6291-9459"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Max L\u00fcbbering","raw_affiliation_strings":["Fraunhofer IAIS,Department of Media Engineering,Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS,Department of Media Engineering,Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064201630","display_name":"Rafet Sifa","orcid":"https://orcid.org/0009-0004-6680-8210"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rafet Sifa","raw_affiliation_strings":["Fraunhofer IAIS,Department of Media Engineering,Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer IAIS,Department of Media Engineering,Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5102998018"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2494,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61254525,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9621000289916992,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9621000289916992,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6594240069389343},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4762014150619507},{"id":"https://openalex.org/keywords/rare-disease","display_name":"Rare disease","score":0.47414466738700867},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4187621474266052},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35224682092666626},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.34850138425827026},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17681384086608887}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6594240069389343},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4762014150619507},{"id":"https://openalex.org/C2779701055","wikidata":"https://www.wikidata.org/wiki/Q929833","display_name":"Rare disease","level":3,"score":0.47414466738700867},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4187621474266052},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35224682092666626},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.34850138425827026},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17681384086608887},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bigdata62323.2024.10910113","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bigdata62323.2024.10910113","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Big Data (BigData)","raw_type":"proceedings-article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/486599","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/486599","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G6602786564","display_name":null,"funder_award_id":"01IS22094A WEST-AI","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2591548807","https://openalex.org/W2921313412","https://openalex.org/W3006087551","https://openalex.org/W4400526199","https://openalex.org/W4406457900","https://openalex.org/W4406460256"],"related_works":["https://openalex.org/W1972035260","https://openalex.org/W4301594054","https://openalex.org/W2794488505","https://openalex.org/W3125889879","https://openalex.org/W3124422538","https://openalex.org/W2295467472","https://openalex.org/W2097909533","https://openalex.org/W3125188128","https://openalex.org/W2144398666","https://openalex.org/W3204019825"],"abstract_inverted_index":{"We":[0],"present":[1],"RepLLaMA,":[2],"a":[3,73],"neural":[4],"ranking":[5],"model":[6],"for":[7,76],"optimizing":[8],"patient":[9,79],"matching":[10],"in":[11],"rare":[12,77],"disease":[13,78],"communities.":[14],"Using":[15],"data":[16],"from":[17],"Unrare.me":[18],"consisting":[19],"of":[20,59],"over":[21,26],"two":[22],"thousand":[23,28],"profiles":[24,34],"and":[25,48],"ten":[27],"ratings,":[29],"our":[30],"bi-encoder":[31],"architecture":[32],"maps":[33],"to":[35],"4096-dimensional":[36],"vectors,":[37],"enabling":[38],"efficient":[39],"similarity":[40],"computations.":[41],"The":[42,70],"system":[43],"processes":[44],"unstructured":[45],"symptom":[46],"descriptions":[47],"structured":[49],"responses,":[50],"incorporating":[51],"expert-guided":[52],"LLM":[53],"enhancements.":[54],"Results":[55],"show":[56],"Top-10":[57],"Recall":[58],"49.36%":[60],"<tex":[61],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[62],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$(\\pm":[63],"2.03)$</tex>,":[64],"surpassing":[65],"baselines":[66],"while":[67],"maintaining":[68],"generalization.":[69],"implementation":[71],"provides":[72],"scalable":[74],"solution":[75],"matching,":[80],"addressing":[81],"computational":[82],"complexity":[83],"challenges.":[84]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-21T23:12:01.093139","created_date":"2025-10-10T00:00:00"}
