{"id":"https://openalex.org/W2056744642","doi":"https://doi.org/10.1109/bibmw.2011.6112561","title":"A software package for next-gen bisulfite sequencing data analysis","display_name":"A software package for next-gen bisulfite sequencing data analysis","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2056744642","doi":"https://doi.org/10.1109/bibmw.2011.6112561","mag":"2056744642"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112561","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112561","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009766063","display_name":"Jeong-Hyeon Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I25041050","display_name":"Augusta University","ror":"https://ror.org/012mef835","country_code":"US","type":"education","lineage":["https://openalex.org/I25041050"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeong-Hyeon Choi","raw_affiliation_strings":["Augusta University, Augusta, GA, US","Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Augusta University, Augusta, GA, US","institution_ids":["https://openalex.org/I25041050"]},{"raw_affiliation_string":"Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA","institution_ids":["https://openalex.org/I25041050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020794060","display_name":"Dong-Sung Ryu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087454","display_name":"Augusta University Health","ror":"https://ror.org/007rawr89","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087454"]},{"id":"https://openalex.org/I25041050","display_name":"Augusta University","ror":"https://ror.org/012mef835","country_code":"US","type":"education","lineage":["https://openalex.org/I25041050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong-Sung Ryu","raw_affiliation_strings":["Cancer Center, Georgia Health Sciences University, Augusta, GA, USA","Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Cancer Center, Georgia Health Sciences University, Augusta, GA, USA","institution_ids":["https://openalex.org/I4210087454"]},{"raw_affiliation_string":"Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA","institution_ids":["https://openalex.org/I25041050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058046067","display_name":"Suhas Sureshchandra","orcid":"https://orcid.org/0000-0002-4141-8564"},"institutions":[{"id":"https://openalex.org/I4210087454","display_name":"Augusta University Health","ror":"https://ror.org/007rawr89","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087454"]},{"id":"https://openalex.org/I25041050","display_name":"Augusta University","ror":"https://ror.org/012mef835","country_code":"US","type":"education","lineage":["https://openalex.org/I25041050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Sureshchandra","raw_affiliation_strings":["Cancer Center, Georgia Health Sciences University, Augusta, GA, USA","Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Cancer Center, Georgia Health Sciences University, Augusta, GA, USA","institution_ids":["https://openalex.org/I4210087454"]},{"raw_affiliation_string":"Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA","institution_ids":["https://openalex.org/I25041050"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061372791","display_name":"Huidong Shi","orcid":"https://orcid.org/0000-0003-1137-3390"},"institutions":[{"id":"https://openalex.org/I25041050","display_name":"Augusta University","ror":"https://ror.org/012mef835","country_code":"US","type":"education","lineage":["https://openalex.org/I25041050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huidong Shi","raw_affiliation_strings":["Augusta University, Augusta, GA, US","Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Augusta University, Augusta, GA, US","institution_ids":["https://openalex.org/I25041050"]},{"raw_affiliation_string":"Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA","institution_ids":["https://openalex.org/I25041050"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008167944","display_name":"Hwan-Gue Cho","orcid":null},"institutions":[{"id":"https://openalex.org/I4921948","display_name":"Pusan National University","ror":"https://ror.org/01an57a31","country_code":"KR","type":"education","lineage":["https://openalex.org/I4921948"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hwan-Gue Cho","raw_affiliation_strings":["Department of Computer Science and Engineering, Pusan National University, Busan, South Korea","Department of Computer Science and Engineering, Pusan National University, PNU, Busan, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Pusan National University, Busan, South Korea","institution_ids":["https://openalex.org/I4921948"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Pusan National University, PNU, Busan, South Korea","institution_ids":["https://openalex.org/I4921948"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009766063"],"corresponding_institution_ids":["https://openalex.org/I25041050"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09762932,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1061","last_page":"1062"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11928","display_name":"Genetic Syndromes and Imprinting","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bisulfite-sequencing","display_name":"Bisulfite sequencing","score":0.7679084539413452},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.701403796672821},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.6015233993530273},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5703635811805725},{"id":"https://openalex.org/keywords/bisulfite","display_name":"Bisulfite","score":0.5206671953201294},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.49116250872612},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4581517279148102},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2858944535255432},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24479681253433228},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22611743211746216},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1617375612258911},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0805259644985199}],"concepts":[{"id":"https://openalex.org/C189235521","wikidata":"https://www.wikidata.org/wiki/Q4087270","display_name":"Bisulfite sequencing","level":5,"score":0.7679084539413452},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.701403796672821},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.6015233993530273},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5703635811805725},{"id":"https://openalex.org/C2775959680","wikidata":"https://www.wikidata.org/wiki/Q2718222","display_name":"Bisulfite","level":5,"score":0.5206671953201294},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.49116250872612},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4581517279148102},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2858944535255432},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24479681253433228},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22611743211746216},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1617375612258911},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0805259644985199},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2011.6112561","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112561","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1989568035","https://openalex.org/W2004078197","https://openalex.org/W2051568429","https://openalex.org/W2059099579","https://openalex.org/W2067130606","https://openalex.org/W2106889224","https://openalex.org/W2131374955","https://openalex.org/W2156165856"],"related_works":["https://openalex.org/W2805216920","https://openalex.org/W2619376220","https://openalex.org/W2064302386","https://openalex.org/W2134949149","https://openalex.org/W2035236309","https://openalex.org/W2895945844","https://openalex.org/W1964177829","https://openalex.org/W2075918583","https://openalex.org/W2426800814","https://openalex.org/W2039097638"],"abstract_inverted_index":{"Bisulfite":[0],"sequencing":[1,9],"(BS-seq)":[2],"is":[3],"one":[4],"of":[5,45],"the":[6],"most":[7],"important":[8],"protocols":[10],"for":[11],"genome-wide":[12],"DNA":[13],"methylation":[14],"studies.":[15],"However,":[16],"it":[17,24],"causes":[18],"significant":[19],"challenges":[20,39],"in":[21],"computation":[22],"because":[23],"converts":[25],"unmethylated":[26],"cytosines":[27],"to":[28,36,41,50],"thymines.":[29],"This":[30],"paper":[31],"presents":[32],"a":[33],"software":[34],"package":[35],"address":[37],"those":[38],"and":[40],"provide":[42],"various":[43],"kinds":[44],"analysis":[46],"modules,":[47],"from":[48],"mapping":[49],"comparing":[51],"multiple":[52],"samples.":[53]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
