{"id":"https://openalex.org/W2060164802","doi":"https://doi.org/10.1109/bibmw.2011.6112556","title":"iQuant: A fast yet accurate GUI tool for transcript quantification","display_name":"iQuant: A fast yet accurate GUI tool for transcript quantification","publication_year":2011,"publication_date":"2011-11-01","ids":{"openalex":"https://openalex.org/W2060164802","doi":"https://doi.org/10.1109/bibmw.2011.6112556","mag":"2060164802"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2011.6112556","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112556","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018043372","display_name":"Tin Nguyen","orcid":"https://orcid.org/0000-0001-8001-9470"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tin Chi Nguyen","raw_affiliation_strings":["Department of Computer Science, Wayne State University, Detroit, MI, USA","Dept. of Computer Science, Wayne State University, Detroit, MI 48202"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Wayne State University, Detroit, MI, USA","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Dept. of Computer Science, Wayne State University, Detroit, MI 48202","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038979016","display_name":"Nan Deng","orcid":"https://orcid.org/0000-0002-7680-3163"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nan Deng","raw_affiliation_strings":["Department of Computer Science, Wayne State University, Detroit, MI, USA","Dept. of Computer Science, Wayne State University, Detroit, MI 48202"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Wayne State University, Detroit, MI, USA","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Dept. of Computer Science, Wayne State University, Detroit, MI 48202","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102546014","display_name":"Guorong Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guorong Xu","raw_affiliation_strings":["Department of Computer Science, University of New Orleans, New Orleans, LA, USA","Department of Computer Science, University of New Orleans, New Orleans, LA 70148"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Orleans, New Orleans, LA, USA","institution_ids":["https://openalex.org/I192396691"]},{"raw_affiliation_string":"Department of Computer Science, University of New Orleans, New Orleans, LA 70148","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088379917","display_name":"Zhansheng Duan","orcid":"https://orcid.org/0000-0001-7366-5984"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhansheng Duan","raw_affiliation_strings":["Department of Computer Science, University of New Orleans, New Orleans, LA, USA","Department of Computer Science, University of New Orleans, New Orleans, LA 70148"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of New Orleans, New Orleans, LA, USA","institution_ids":["https://openalex.org/I192396691"]},{"raw_affiliation_string":"Department of Computer Science, University of New Orleans, New Orleans, LA 70148","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009256505","display_name":"Dongxiao Zhu","orcid":"https://orcid.org/0000-0002-0225-7817"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongxiao Zhu","raw_affiliation_strings":["Department of Computer Science, Wayne State University, Detroit, MI, USA","Dept. of Computer Science, Wayne State University, Detroit, MI 48202"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Wayne State University, Detroit, MI, USA","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Dept. of Computer Science, Wayne State University, Detroit, MI 48202","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5018043372"],"corresponding_institution_ids":["https://openalex.org/I185443292"],"apc_list":null,"apc_paid":null,"fwci":0.3909,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.61655336,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"34","issue":null,"first_page":"1048","last_page":"1050"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7422062754631042},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47537532448768616},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4667520821094513},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.3890901207923889},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37610694766044617},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15790113806724548},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1449585258960724},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11243066191673279}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7422062754631042},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47537532448768616},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4667520821094513},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3890901207923889},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37610694766044617},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15790113806724548},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1449585258960724},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11243066191673279},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2011.6112556","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2011.6112556","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W2017728350","https://openalex.org/W2024819063","https://openalex.org/W2093253451","https://openalex.org/W2098849734","https://openalex.org/W2100448568","https://openalex.org/W2107564978","https://openalex.org/W2114944267","https://openalex.org/W2141458291","https://openalex.org/W2152509863","https://openalex.org/W2154954867","https://openalex.org/W3029645440","https://openalex.org/W4301014524"],"related_works":["https://openalex.org/W4394359997","https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362485661","https://openalex.org/W4394365953"],"abstract_inverted_index":{"Transcript":[0],"quantification":[1,34],"using":[2],"RNA-seq":[3,39],"is":[4],"central":[5],"to":[6],"contemporary":[7],"and":[8,48,72,82],"future":[9],"transcriptomics":[10],"research.":[11],"The":[12],"existing":[13,63],"tools":[14,65],"are":[15,86],"useful":[16],"but":[17],"have":[18],"much":[19],"room":[20],"for":[21,79],"improvement.":[22],"We":[23],"present":[24],"a":[25,29,53],"new":[26],"statistical":[27],"model,":[28],"fast":[30],"yet":[31],"accurate":[32],"transcript":[33,50],"algorithm.":[35],"Our":[36,57],"tool":[37,85],"takes":[38],"reads":[40],"in":[41,66],"fasta":[42],"or":[43],"fastq":[44],"format":[45],"as":[46],"input":[47],"output":[49],"abundance":[51],"through":[52],"few":[54],"mouse":[55],"clicks.":[56],"method":[58,80],"compares":[59],"favorably":[60],"with":[61],"the":[62,83],"GUI":[64,84],"terms":[67],"of":[68],"both":[69],"time":[70],"complexity":[71],"accuracy.":[73],"Availability:":[74],"Both":[75],"simulation":[76],"data":[77],"used":[78],"comparisons":[81],"freely":[87],"available":[88],"at":[89],"http://asammate.sourceforge.net/.":[90]},"counts_by_year":[{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}