{"id":"https://openalex.org/W7126107536","doi":"https://doi.org/10.1109/bibm66473.2025.11356524","title":"Syndrome-Molecule Graph Attention Networks (S-MoleGAT):Towards Interpretable TCM Prescription Generation","display_name":"Syndrome-Molecule Graph Attention Networks (S-MoleGAT):Towards Interpretable TCM Prescription Generation","publication_year":2025,"publication_date":"2025-12-15","ids":{"openalex":"https://openalex.org/W7126107536","doi":"https://doi.org/10.1109/bibm66473.2025.11356524"},"language":null,"primary_location":{"id":"doi:10.1109/bibm66473.2025.11356524","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356524","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113656054","display_name":"Songtao Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I118803816","display_name":"Liaoning University","ror":"https://ror.org/03xpwj629","country_code":"CN","type":"education","lineage":["https://openalex.org/I118803816"]},{"id":"https://openalex.org/I156292868","display_name":"Dalian University of Foreign Languages","ror":"https://ror.org/008a8z393","country_code":"CN","type":"education","lineage":["https://openalex.org/I156292868"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Songtao Jiang","raw_affiliation_strings":["Dalian University, College of Information Engineering,Liaoning,China"],"affiliations":[{"raw_affiliation_string":"Dalian University, College of Information Engineering,Liaoning,China","institution_ids":["https://openalex.org/I118803816","https://openalex.org/I4210092944","https://openalex.org/I156292868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010564733","display_name":"Zuxu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I118803816","display_name":"Liaoning University","ror":"https://ror.org/03xpwj629","country_code":"CN","type":"education","lineage":["https://openalex.org/I118803816"]},{"id":"https://openalex.org/I156292868","display_name":"Dalian University of Foreign Languages","ror":"https://ror.org/008a8z393","country_code":"CN","type":"education","lineage":["https://openalex.org/I156292868"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zuxu Wang","raw_affiliation_strings":["Dalian University, College of Information Engineering,Liaoning,China"],"affiliations":[{"raw_affiliation_string":"Dalian University, College of Information Engineering,Liaoning,China","institution_ids":["https://openalex.org/I118803816","https://openalex.org/I4210092944","https://openalex.org/I156292868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124200887","display_name":"Yichen Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144367","display_name":"Zhejiang Pharmaceutical College","ror":"https://ror.org/04s9pf004","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210144367"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yichen Wang","raw_affiliation_strings":["Zhejiang University, College of Pharmaceutical Science,Zhejinag,China"],"affiliations":[{"raw_affiliation_string":"Zhejiang University, College of Pharmaceutical Science,Zhejinag,China","institution_ids":["https://openalex.org/I4210144367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100671617","display_name":"Xuesong Liu","orcid":"https://orcid.org/0000-0001-6491-0677"},"institutions":[{"id":"https://openalex.org/I118803816","display_name":"Liaoning University","ror":"https://ror.org/03xpwj629","country_code":"CN","type":"education","lineage":["https://openalex.org/I118803816"]},{"id":"https://openalex.org/I156292868","display_name":"Dalian University of Foreign Languages","ror":"https://ror.org/008a8z393","country_code":"CN","type":"education","lineage":["https://openalex.org/I156292868"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuesong Liu","raw_affiliation_strings":["Dalian University, College of Information Engineering,Liaoning,China"],"affiliations":[{"raw_affiliation_string":"Dalian University, College of Information Engineering,Liaoning,China","institution_ids":["https://openalex.org/I118803816","https://openalex.org/I4210092944","https://openalex.org/I156292868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028374998","display_name":"Changqing Ji","orcid":null},"institutions":[{"id":"https://openalex.org/I118803816","display_name":"Liaoning University","ror":"https://ror.org/03xpwj629","country_code":"CN","type":"education","lineage":["https://openalex.org/I118803816"]},{"id":"https://openalex.org/I156292868","display_name":"Dalian University of Foreign Languages","ror":"https://ror.org/008a8z393","country_code":"CN","type":"education","lineage":["https://openalex.org/I156292868"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changqing Ji","raw_affiliation_strings":["Dalian University, College of Information Engineering,Liaoning,China"],"affiliations":[{"raw_affiliation_string":"Dalian University, College of Information Engineering,Liaoning,China","institution_ids":["https://openalex.org/I118803816","https://openalex.org/I4210092944","https://openalex.org/I156292868"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082767343","display_name":"ZuMin Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I118803816","display_name":"Liaoning University","ror":"https://ror.org/03xpwj629","country_code":"CN","type":"education","lineage":["https://openalex.org/I118803816"]},{"id":"https://openalex.org/I156292868","display_name":"Dalian University of Foreign Languages","ror":"https://ror.org/008a8z393","country_code":"CN","type":"education","lineage":["https://openalex.org/I156292868"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zumin Wang","raw_affiliation_strings":["Dalian University, College of Information Engineering,Liaoning,China"],"affiliations":[{"raw_affiliation_string":"Dalian University, College of Information Engineering,Liaoning,China","institution_ids":["https://openalex.org/I118803816","https://openalex.org/I4210092944","https://openalex.org/I156292868"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5113656054"],"corresponding_institution_ids":["https://openalex.org/I118803816","https://openalex.org/I156292868","https://openalex.org/I4210092944"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.83951518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"5501","last_page":"5508"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.551800012588501,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.551800012588501,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.13030000030994415,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.12250000238418579,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5192000269889832},{"id":"https://openalex.org/keywords/attention-network","display_name":"Attention network","score":0.4869999885559082},{"id":"https://openalex.org/keywords/medical-prescription","display_name":"Medical prescription","score":0.36739999055862427},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.3619000017642975},{"id":"https://openalex.org/keywords/perception","display_name":"Perception","score":0.3208000063896179},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.31209999322891235}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6668000221252441},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5529999732971191},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5192000269889832},{"id":"https://openalex.org/C2993807640","wikidata":"https://www.wikidata.org/wiki/Q103709453","display_name":"Attention network","level":2,"score":0.4869999885559082},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3840000033378601},{"id":"https://openalex.org/C2426938","wikidata":"https://www.wikidata.org/wiki/Q3355478","display_name":"Medical prescription","level":2,"score":0.36739999055862427},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.3619000017642975},{"id":"https://openalex.org/C26760741","wikidata":"https://www.wikidata.org/wiki/Q160402","display_name":"Perception","level":2,"score":0.3208000063896179},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.31209999322891235},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3061999976634979},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2906000018119812},{"id":"https://openalex.org/C100776233","wikidata":"https://www.wikidata.org/wiki/Q2532492","display_name":"Bridge (graph theory)","level":2,"score":0.2881999909877777},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.2651999890804291},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.2597000002861023},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.2574000060558319},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.2533999979496002}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm66473.2025.11356524","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356524","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1987710883","https://openalex.org/W2536354928","https://openalex.org/W2782374321","https://openalex.org/W2792839191","https://openalex.org/W2914523537","https://openalex.org/W2951626319","https://openalex.org/W2964068143","https://openalex.org/W2965363157","https://openalex.org/W3032163490","https://openalex.org/W3042856524","https://openalex.org/W3192905713","https://openalex.org/W3213048767","https://openalex.org/W3214433768","https://openalex.org/W4220985919","https://openalex.org/W4313525684","https://openalex.org/W4367047209","https://openalex.org/W4400362104","https://openalex.org/W4403016731","https://openalex.org/W4406354518"],"related_works":[],"abstract_inverted_index":{"Traditional":[0],"Chinese":[1],"Medicine":[2],"prescription":[3],"recommendation":[4],"faces":[5],"significant":[6],"challenges":[7],"in":[8],"integrating":[9,65],"holistic":[10],"diagnostic":[11],"principles":[12],"with":[13,36,91],"molecular-level":[14],"interpretability.":[15],"To":[16],"bridge":[17],"this":[18],"gap,":[19],"we":[20],"propose":[21],"Syndrome-Molecule":[22],"Graph":[23],"Attention":[24],"Networks":[25],"(S-MoleGAT),":[26],"a":[27],"novel":[28],"cross-modal":[29,116],"framework":[30],"that":[31],"synergizes":[32],"TCM":[33,121],"syndrome":[34,54],"differentiation":[35],"molecular":[37,79],"interaction":[38],"modeling.":[39],"Our":[40],"approach":[41],"features":[42],"three":[43],"key":[44],"innovations:":[45],"(1)":[46],"A":[47,60,73],"temporal":[48],"symptom":[49],"perception":[50],"module":[51],"capturing":[52],"dynamic":[53],"progression":[55],"through":[56,115],"GRU":[57],"networks,":[58],"(2)":[59],"heterogeneous":[61],"graph":[62],"convolutional":[63],"network":[64],"symptomherb":[66],"relationships":[67],"across":[68],"medical":[69],"paradigms,":[70],"and":[71,84],"(3)":[72],"dualchannel":[74],"component":[75],"propagation":[76],"mechanism":[77],"analyzing":[78],"synergies":[80],"via":[81],"substructure":[82],"attention":[83,117],"message-passing":[85],"networks.":[86],"Evaluations":[87],"demonstrate":[88],"S-MoleGAT's":[89],"superiority":[90],"0.387":[92],"similarity":[93],"ratio":[94],"(17.3%":[95],"above":[96],"clinical":[97],"benchmarks),":[98],"identifying":[99],"5.02":[100],"similar":[101],"pairs/prescription":[102],"at":[103],"optimal":[104],"herb":[105,112],"count":[106],"(13.05).":[107],"The":[108],"model":[109],"provides":[110],"interpretable":[111],"compatibility":[113],"insights":[114],"mechanisms,":[118],"advancing":[119],"scientifically-grounded":[120],"modernization.":[122]},"counts_by_year":[],"updated_date":"2026-02-23T20:09:44.859080","created_date":"2026-01-30T00:00:00"}
