{"id":"https://openalex.org/W3127076457","doi":"https://doi.org/10.1109/bibm49941.2020.9313403","title":"CBEx: A Hybrid Approach for Cancer Biomarker Extraction","display_name":"CBEx: A Hybrid Approach for Cancer Biomarker Extraction","publication_year":2020,"publication_date":"2020-12-16","ids":{"openalex":"https://openalex.org/W3127076457","doi":"https://doi.org/10.1109/bibm49941.2020.9313403","mag":"3127076457"},"language":"en","primary_location":{"id":"doi:10.1109/bibm49941.2020.9313403","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313403","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101486242","display_name":"Xiangyu Gao","orcid":"https://orcid.org/0000-0002-0302-269X"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiangyu Gao","raw_affiliation_strings":["New Jersey Institute of Technology, Newark, NJ"],"affiliations":[{"raw_affiliation_string":"New Jersey Institute of Technology, Newark, NJ","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067803938","display_name":"Jinhe Shi","orcid":"https://orcid.org/0000-0002-4043-4212"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinhe Shi","raw_affiliation_strings":["New Jersey Institute of Technology, Newark, NJ"],"affiliations":[{"raw_affiliation_string":"New Jersey Institute of Technology, Newark, NJ","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021405510","display_name":"Wenjin Chen","orcid":"https://orcid.org/0000-0003-3759-1900"},"institutions":[{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute of New Jersey","ror":"https://ror.org/0060x3y55","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]},{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenjin Chen","raw_affiliation_strings":["Rutgers Cancer Institute of New Jersey, New Brunswick, NJ"],"affiliations":[{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, NJ","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043384705","display_name":"Nancy Sazo","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute of New Jersey","ror":"https://ror.org/0060x3y55","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nancy Sazo","raw_affiliation_strings":["Rutgers Cancer Institute of New Jersey, New Brunswick, NJ"],"affiliations":[{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, NJ","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070074925","display_name":"Huiqi Chu","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute of New Jersey","ror":"https://ror.org/0060x3y55","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huiqi Chu","raw_affiliation_strings":["Rutgers Cancer Institute of New Jersey, New Brunswick, NJ"],"affiliations":[{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, NJ","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028030572","display_name":"Evita Sadimin","orcid":"https://orcid.org/0000-0003-4275-1358"},"institutions":[{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute of New Jersey","ror":"https://ror.org/0060x3y55","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]},{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evita Sadimin","raw_affiliation_strings":["Rutgers Cancer Institute of New Jersey, New Brunswick, NJ"],"affiliations":[{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, NJ","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089373018","display_name":"David J. Foran","orcid":"https://orcid.org/0000-0002-0090-0055"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute of New Jersey","ror":"https://ror.org/0060x3y55","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David J. Foran","raw_affiliation_strings":["Rutgers Cancer Institute of New Jersey, New Brunswick, NJ"],"affiliations":[{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, NJ","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100419293","display_name":"Yi Chen","orcid":"https://orcid.org/0000-0003-3669-1643"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Chen","raw_affiliation_strings":["New Jersey Institute of Technology, Newark, NJ"],"affiliations":[{"raw_affiliation_string":"New Jersey Institute of Technology, Newark, NJ","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101486242"],"corresponding_institution_ids":["https://openalex.org/I118118575"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.13443841,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"2958","last_page":"2958"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.8265928030014038},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6872372031211853},{"id":"https://openalex.org/keywords/extractor","display_name":"Extractor","score":0.5185954570770264},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.47360658645629883},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.44816941022872925},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4341225028038025},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11124402284622192},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08758768439292908},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.0764617919921875},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07164853811264038}],"concepts":[{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.8265928030014038},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6872372031211853},{"id":"https://openalex.org/C117978034","wikidata":"https://www.wikidata.org/wiki/Q5422192","display_name":"Extractor","level":2,"score":0.5185954570770264},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.47360658645629883},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.44816941022872925},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4341225028038025},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11124402284622192},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08758768439292908},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0764617919921875},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07164853811264038},{"id":"https://openalex.org/C21880701","wikidata":"https://www.wikidata.org/wiki/Q2144042","display_name":"Process engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm49941.2020.9313403","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313403","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2146089916"],"related_works":["https://openalex.org/W3082848404","https://openalex.org/W1979583797","https://openalex.org/W2016864125","https://openalex.org/W2372254676","https://openalex.org/W2080135837","https://openalex.org/W2793679056","https://openalex.org/W4283332091","https://openalex.org/W3145050838","https://openalex.org/W2533581028","https://openalex.org/W2393154870"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"a":[3,15,24,35],"novel":[4],"hybrid":[5],"approach":[6],"for":[7],"extracting":[8],"cancer":[9],"biomarkers":[10],"from":[11,42],"pathology":[12],"reports":[13],"and":[14,34],"prototype":[16],"system,":[17],"CBEx":[18,49],"(Cancer":[19],"Biomarker":[20],"Extractor).":[21],"It":[22],"integrates":[23],"Long":[25],"Short-Time":[26],"Memory":[27],"Neural":[28],"Network":[29],"that":[30,48],"identifies":[31],"biomarker-containing":[32],"sentences":[33],"dictionary-based":[36],"method":[37],"to":[38],"extract":[39],"biomarker":[40],"mentions":[41],"those":[43],"sentences.":[44],"Preliminary":[45],"results":[46],"show":[47],"outperforms":[50],"existing":[51],"methods.":[52]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
