{"id":"https://openalex.org/W2033913895","doi":"https://doi.org/10.1109/bibm.2010.5706563","title":"SoyMetDB: The soybean metabolome database","display_name":"SoyMetDB: The soybean metabolome database","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2033913895","doi":"https://doi.org/10.1109/bibm.2010.5706563","mag":"2033913895"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2010.5706563","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706563","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071079252","display_name":"Trupti Joshi","orcid":"https://orcid.org/0000-0001-8944-4924"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I4210166498","display_name":"Indian Institute of Soybean Research","ror":"https://ror.org/05vm6r550","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210166498"]}],"countries":["IN","US"],"is_corresponding":true,"raw_author_name":"Trupti Joshi","raw_affiliation_strings":["Department of Computer Science, Christopher S. Bond Life Sciences Center, National Center of Soybean Biotechnology, University of Missouri, Columbia, MO, USA","National Center of Soybean Biotechnology"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Christopher S. Bond Life Sciences Center, National Center of Soybean Biotechnology, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center of Soybean Biotechnology","institution_ids":["https://openalex.org/I4210166498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049970842","display_name":"Qiuming Yao","orcid":"https://orcid.org/0000-0002-8056-3107"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiuming Yao","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center","Department of Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA"],"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072096851","display_name":"D. Franklin Levi","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Franklin Levi","raw_affiliation_strings":["Department of Computer Science; University of Missouri, Columbia, MO 65211-2060, USA","University of Missouri, Columbia, MO 65211-2060, USA","Department of Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science; University of Missouri, Columbia, MO 65211-2060, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"University of Missouri, Columbia, MO 65211-2060, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039264968","display_name":"Laurent Brechenmacher","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I4210166498","display_name":"Indian Institute of Soybean Research","ror":"https://ror.org/05vm6r550","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210166498"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Laurent Brechenmacher","raw_affiliation_strings":["Division of Plant Sciences, University of Missouri, Columbia, MO, USA","National Center of Soybean Biotechnology"],"affiliations":[{"raw_affiliation_string":"Division of Plant Sciences, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center of Soybean Biotechnology","institution_ids":["https://openalex.org/I4210166498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076787745","display_name":"Babu Valliyodan","orcid":"https://orcid.org/0000-0001-9457-9508"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I4210166498","display_name":"Indian Institute of Soybean Research","ror":"https://ror.org/05vm6r550","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210166498"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Babu Valliyodan","raw_affiliation_strings":["Division of Plant Sciences, University of Missouri, Columbia, MO, USA","National Center of Soybean Biotechnology"],"affiliations":[{"raw_affiliation_string":"Division of Plant Sciences, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center of Soybean Biotechnology","institution_ids":["https://openalex.org/I4210166498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015973388","display_name":"Gary Stacey","orcid":"https://orcid.org/0000-0001-5914-2247"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I4210166498","display_name":"Indian Institute of Soybean Research","ror":"https://ror.org/05vm6r550","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210166498"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Gary Stacey","raw_affiliation_strings":["Division of Plant Sciences, University of Missouri, Columbia, MO, USA","National Center of Soybean Biotechnology"],"affiliations":[{"raw_affiliation_string":"Division of Plant Sciences, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center of Soybean Biotechnology","institution_ids":["https://openalex.org/I4210166498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045241930","display_name":"Henry T. Nguyen","orcid":"https://orcid.org/0000-0002-7597-1800"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I4210166498","display_name":"Indian Institute of Soybean Research","ror":"https://ror.org/05vm6r550","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210166498"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Henry Nguyen","raw_affiliation_strings":["Division of Plant Sciences, University of Missouri, Columbia, MO, USA","National Center of Soybean Biotechnology"],"affiliations":[{"raw_affiliation_string":"Division of Plant Sciences, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center of Soybean Biotechnology","institution_ids":["https://openalex.org/I4210166498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]},{"id":"https://openalex.org/I4210166498","display_name":"Indian Institute of Soybean Research","ror":"https://ror.org/05vm6r550","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210166498"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Department of Computer Science, Christopher S. Bond Life Sciences Center, National Center of Soybean Biotechnology, University of Missouri, Columbia, MO, USA","National Center of Soybean Biotechnology"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Christopher S. Bond Life Sciences Center, National Center of Soybean Biotechnology, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"National Center of Soybean Biotechnology","institution_ids":["https://openalex.org/I4210166498"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5071079252"],"corresponding_institution_ids":["https://openalex.org/I4210166498","https://openalex.org/I76835614"],"apc_list":null,"apc_paid":null,"fwci":0.3965,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.61630066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"203","last_page":"208"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13142","display_name":"GABA and Rice Research","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11318","display_name":"Phytoestrogen effects and research","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolome","display_name":"Metabolome","score":0.8165901899337769},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.8096742630004883},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.7635128498077393},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6228182911872864},{"id":"https://openalex.org/keywords/metabolite-profiling","display_name":"Metabolite profiling","score":0.5964838862419128},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.46917182207107544},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4664537310600281},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4221816956996918},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.356441855430603},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32190221548080444},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26476824283599854},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24443715810775757},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09655427932739258}],"concepts":[{"id":"https://openalex.org/C135870905","wikidata":"https://www.wikidata.org/wiki/Q903667","display_name":"Metabolome","level":3,"score":0.8165901899337769},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.8096742630004883},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.7635128498077393},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6228182911872864},{"id":"https://openalex.org/C2994400308","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolite profiling","level":3,"score":0.5964838862419128},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.46917182207107544},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4664537310600281},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4221816956996918},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.356441855430603},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32190221548080444},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26476824283599854},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24443715810775757},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09655427932739258},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2010.5706563","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2010.5706563","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1977027255","https://openalex.org/W2015149264","https://openalex.org/W2023098599","https://openalex.org/W2042351135","https://openalex.org/W2053385401","https://openalex.org/W2084273770","https://openalex.org/W2088306260","https://openalex.org/W2101362410","https://openalex.org/W2102296370","https://openalex.org/W2151346683","https://openalex.org/W2157599003","https://openalex.org/W2159482845","https://openalex.org/W2162466002","https://openalex.org/W2246620632","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W1996644818","https://openalex.org/W1965468642","https://openalex.org/W2093500216","https://openalex.org/W2053588008","https://openalex.org/W2916376502","https://openalex.org/W3101161779","https://openalex.org/W423371831","https://openalex.org/W2777729175","https://openalex.org/W2260452057","https://openalex.org/W3084209502"],"abstract_inverted_index":{"SoyMetDB":[0,69,131],"is":[1,19],"a":[2,22,98],"metabolomic":[3,32,63,72],"database":[4],"for":[5,26,74,88,127],"soybean,":[6],"developed":[7],"to":[8,20,57,115],"target":[9],"the":[10,14,82,103,113,117,122],"growing":[11],"needs":[12],"of":[13,38,85],"soybean":[15,31],"community.":[16],"The":[17],"goal":[18],"provide":[21],"one-stop":[23],"web":[24],"resource":[25],"integrating,":[27],"mining":[28],"and":[29,36,44,50,67,77,109,120],"visualizing":[30],"data,":[33],"including":[34,65,81],"identification":[35],"expression":[37,83],"various":[39,86,106],"metabolites":[40],"across":[41],"different":[42],"experiments":[43,87],"time":[45],"courses.":[46],"It":[47,95],"incorporates":[48,97],"GC-MS":[49],"LC-MS":[51],"based":[52],"metabolite-profiling":[53],"data":[54,73,104],"dynamically":[55],"linked":[56],"metabolite":[58,92,129],"information":[59,80],"from":[60,105],"other":[61],"public":[62],"databases,":[64],"HMDB":[66],"Knapsack.":[68],"includes":[70],"Arabidopsis":[71],"cross-species":[75],"comparisons":[76],"can":[78,132],"retrieve":[79],"patterns":[84],"complete":[89],"or":[90],"partial":[91],"name":[93],"queries.":[94,130],"also":[96],"pathway":[99],"viewer":[100],"tool":[101],"integrating":[102],"experimental":[107],"conditions":[108],"presenting":[110],"them":[111],"on":[112],"pathways":[114,126],"highlight":[116],"expressed":[118],"metabolite,":[119],"identifies":[121],"most":[123],"highly":[124],"represented":[125],"multiple":[128],"be":[133],"accessed":[134],"at":[135],"http://soymetdb.org.":[136]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
