{"id":"https://openalex.org/W4401210547","doi":"https://doi.org/10.1109/access.2024.3437215","title":"A New Framework for Pinpointing Crucial Proteins in Protein-Protein Interaction Networks","display_name":"A New Framework for Pinpointing Crucial Proteins in Protein-Protein Interaction Networks","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4401210547","doi":"https://doi.org/10.1109/access.2024.3437215"},"language":"en","primary_location":{"id":"doi:10.1109/access.2024.3437215","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3437215","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2024.3437215","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070104959","display_name":"Abdul Moiz","orcid":"https://orcid.org/0000-0003-0423-0594"},"institutions":[{"id":"https://openalex.org/I4210133438","display_name":"Habib University","ror":"https://ror.org/030p2g996","country_code":"PK","type":"education","lineage":["https://openalex.org/I4210133438"]},{"id":"https://openalex.org/I4394709125","display_name":"Salim Habib University","ror":"https://ror.org/004j8pp46","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709125"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Abdul Moiz","raw_affiliation_strings":["Department of Biomedical Engineering, Salim Habib University, Karachi, Pakistan"],"raw_orcid":"https://orcid.org/0000-0003-0423-0594","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Salim Habib University, Karachi, Pakistan","institution_ids":["https://openalex.org/I4210133438","https://openalex.org/I4394709125"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020847809","display_name":"Ubaida Fatima","orcid":"https://orcid.org/0000-0003-0372-0858"},"institutions":[{"id":"https://openalex.org/I151746803","display_name":"NED University of Engineering and Technology","ror":"https://ror.org/05db8zr24","country_code":"PK","type":"education","lineage":["https://openalex.org/I151746803"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Ubaida Fatima","raw_affiliation_strings":["Department of Mathematics, NED University of Engineering &#x0026; Technology, Karachi, Pakistan"],"raw_orcid":"https://orcid.org/0000-0003-0372-0858","affiliations":[{"raw_affiliation_string":"Department of Mathematics, NED University of Engineering &#x0026; Technology, Karachi, Pakistan","institution_ids":["https://openalex.org/I151746803"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112846729","display_name":"Muhammad Zeeshan Ul Haque","orcid":null},"institutions":[{"id":"https://openalex.org/I4210133438","display_name":"Habib University","ror":"https://ror.org/030p2g996","country_code":"PK","type":"education","lineage":["https://openalex.org/I4210133438"]},{"id":"https://openalex.org/I4394709125","display_name":"Salim Habib University","ror":"https://ror.org/004j8pp46","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709125"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"M. Zeeshan Ul Haque","raw_affiliation_strings":["Department of Biomedical Engineering, Salim Habib University, Karachi, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Salim Habib University, Karachi, Pakistan","institution_ids":["https://openalex.org/I4210133438","https://openalex.org/I4394709125"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070104959"],"corresponding_institution_ids":["https://openalex.org/I4210133438","https://openalex.org/I4394709125"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":2.1725,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.87765657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"12","issue":null,"first_page":"108425","last_page":"108444"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9753000140190125,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fuzzy-logic","display_name":"Fuzzy logic","score":0.6174887418746948},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6066861748695374},{"id":"https://openalex.org/keywords/betweenness-centrality","display_name":"Betweenness centrality","score":0.569829523563385},{"id":"https://openalex.org/keywords/closeness","display_name":"Closeness","score":0.5446175932884216},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.53801029920578},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5375165343284607},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5266247391700745},{"id":"https://openalex.org/keywords/fuzzy-set","display_name":"Fuzzy set","score":0.5199947953224182},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.4642430543899536},{"id":"https://openalex.org/keywords/membership-function","display_name":"Membership function","score":0.44732001423835754},{"id":"https://openalex.org/keywords/ambiguity","display_name":"Ambiguity","score":0.4454713463783264},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40824151039123535},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4010276794433594},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24228161573410034},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.22355926036834717},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14561069011688232},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11483174562454224},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09434974193572998},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.07352352142333984}],"concepts":[{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.6174887418746948},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6066861748695374},{"id":"https://openalex.org/C117045392","wikidata":"https://www.wikidata.org/wiki/Q4899215","display_name":"Betweenness centrality","level":3,"score":0.569829523563385},{"id":"https://openalex.org/C2779545769","wikidata":"https://www.wikidata.org/wiki/Q5135364","display_name":"Closeness","level":2,"score":0.5446175932884216},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.53801029920578},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5375165343284607},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5266247391700745},{"id":"https://openalex.org/C42011625","wikidata":"https://www.wikidata.org/wiki/Q1055058","display_name":"Fuzzy set","level":3,"score":0.5199947953224182},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.4642430543899536},{"id":"https://openalex.org/C5263885","wikidata":"https://www.wikidata.org/wiki/Q1967302","display_name":"Membership function","level":4,"score":0.44732001423835754},{"id":"https://openalex.org/C2780522230","wikidata":"https://www.wikidata.org/wiki/Q1140419","display_name":"Ambiguity","level":2,"score":0.4454713463783264},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40824151039123535},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4010276794433594},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24228161573410034},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.22355926036834717},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14561069011688232},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11483174562454224},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09434974193572998},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07352352142333984},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2024.3437215","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3437215","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:8c8d976bcbde43bfb7e7ae65c562a044","is_oa":true,"landing_page_url":"https://doaj.org/article/8c8d976bcbde43bfb7e7ae65c562a044","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 12, Pp 108425-108444 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2024.3437215","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3437215","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":114,"referenced_works":["https://openalex.org/W1549773900","https://openalex.org/W1600604896","https://openalex.org/W1667784628","https://openalex.org/W1958731645","https://openalex.org/W1965788922","https://openalex.org/W1975191997","https://openalex.org/W1977385837","https://openalex.org/W1985829088","https://openalex.org/W1986310535","https://openalex.org/W1988876888","https://openalex.org/W1989921625","https://openalex.org/W1990099078","https://openalex.org/W1991861362","https://openalex.org/W1996771751","https://openalex.org/W1997832163","https://openalex.org/W1998602548","https://openalex.org/W1999808266","https://openalex.org/W2001709662","https://openalex.org/W2007245700","https://openalex.org/W2008541887","https://openalex.org/W2009187320","https://openalex.org/W2015523368","https://openalex.org/W2017975254","https://openalex.org/W2020068229","https://openalex.org/W2020184397","https://openalex.org/W2021296110","https://openalex.org/W2021723654","https://openalex.org/W2023521597","https://openalex.org/W2032801900","https://openalex.org/W2037895634","https://openalex.org/W2043282701","https://openalex.org/W2046347502","https://openalex.org/W2046700583","https://openalex.org/W2050242465","https://openalex.org/W2059569036","https://openalex.org/W2060941112","https://openalex.org/W2061016099","https://openalex.org/W2064656092","https://openalex.org/W2065346739","https://openalex.org/W2066029883","https://openalex.org/W2068610172","https://openalex.org/W2069653972","https://openalex.org/W2073810164","https://openalex.org/W2074139663","https://openalex.org/W2077348129","https://openalex.org/W2078174444","https://openalex.org/W2080578111","https://openalex.org/W2086042158","https://openalex.org/W2087117016","https://openalex.org/W2089125183","https://openalex.org/W2095326378","https://openalex.org/W2101788980","https://openalex.org/W2105089945","https://openalex.org/W2105469941","https://openalex.org/W2106000224","https://openalex.org/W2107563012","https://openalex.org/W2108992945","https://openalex.org/W2110837498","https://openalex.org/W2114213946","https://openalex.org/W2115931003","https://openalex.org/W2119889328","https://openalex.org/W2120585399","https://openalex.org/W2127800791","https://openalex.org/W2130552692","https://openalex.org/W2130790725","https://openalex.org/W2132161768","https://openalex.org/W2135098204","https://openalex.org/W2142524644","https://openalex.org/W2146447390","https://openalex.org/W2147309680","https://openalex.org/W2147921697","https://openalex.org/W2148116878","https://openalex.org/W2152424535","https://openalex.org/W2153114644","https://openalex.org/W2154897810","https://openalex.org/W2160146840","https://openalex.org/W2161604082","https://openalex.org/W2161678141","https://openalex.org/W2163736554","https://openalex.org/W2171858691","https://openalex.org/W2391179902","https://openalex.org/W2484439696","https://openalex.org/W2506377511","https://openalex.org/W2513563526","https://openalex.org/W2563010899","https://openalex.org/W2576704717","https://openalex.org/W2751584274","https://openalex.org/W2765203444","https://openalex.org/W2789376897","https://openalex.org/W2792330169","https://openalex.org/W2800598001","https://openalex.org/W2808780862","https://openalex.org/W2903685305","https://openalex.org/W2919287201","https://openalex.org/W2962842826","https://openalex.org/W3000696438","https://openalex.org/W3007488049","https://openalex.org/W3023236963","https://openalex.org/W3112376646","https://openalex.org/W3136431264","https://openalex.org/W3155940589","https://openalex.org/W3162389729","https://openalex.org/W3207471891","https://openalex.org/W4211007335","https://openalex.org/W4211054902","https://openalex.org/W4224219424","https://openalex.org/W4224884286","https://openalex.org/W4255114360","https://openalex.org/W4290830324","https://openalex.org/W4320351780","https://openalex.org/W4366779419","https://openalex.org/W4389196583","https://openalex.org/W4394862701","https://openalex.org/W6635873800"],"related_works":["https://openalex.org/W1973509935","https://openalex.org/W4389076551","https://openalex.org/W2107855069","https://openalex.org/W2611574733","https://openalex.org/W2241641394","https://openalex.org/W2514739320","https://openalex.org/W2097992793","https://openalex.org/W2140653560","https://openalex.org/W2348831795","https://openalex.org/W4312461432"],"abstract_inverted_index":{"Identifying":[0],"crucial":[1,89,176],"proteins":[2,151],"in":[3,174],"protein-protein":[4],"interaction":[5,18,51,129],"(PPI)":[6],"networks":[7],"is":[8],"essential":[9],"for":[10],"understanding":[11],"biological":[12],"systems.":[13],"However,":[14],"the":[15,94,117,147],"ambiguity":[16],"of":[17,23,88,93,149],"strength":[19,52],"hinders":[20],"accurate":[21],"identification":[22,87],"key":[24],"proteins.":[25,90,177],"To":[26],"address":[27],"this":[28,30],"issue,":[29],"study":[31],"proposes":[32],"a":[33,40,132],"new":[34],"framework":[35,96],"that":[36,44,122],"introduces":[37],"Bio-Link":[38],"Strength,":[39],"fuzzy":[41,46,73,77,79,82,138,155,159,172],"membership":[42,124],"function":[43,125],"utilizes":[45],"set":[47],"theory":[48],"to":[49,72,115],"quantifies":[50],"with":[53,131],"continuous":[54],"values":[55],"between":[56,137],"0":[57],"and":[58,70,81,112,139,161,169],"1.":[59],"Framework":[60],"extends":[61],"four":[62],"commonly":[63,102],"used":[64,103],"traditional":[65,140,167],"measures":[66,74,164,173],"(degree,":[67],"closeness,":[68],"betweenness,":[69],"eigenvector)":[71],"(fuzzy":[75],"connectivity,":[76],"approachability,":[78],"bridge,":[80],"influence":[83,162],"centrality),":[84],"enabling":[85],"effective":[86],"The":[91],"efficacy":[92],"proposed":[95,123,171],"has":[97],"been":[98],"assessed":[99],"on":[100],"different":[101],"real-world":[104],"PPI":[105],"network":[106],"datasets":[107],"(Saccharomyces":[108],"cerevisiae,":[109],"Escherichia":[110],"coli,":[111],"Drosophila":[113],"melanogaster),":[114],"prove":[116],"framework\u2019s":[118],"scalability.":[119],"Results":[120],"show":[121],"effectively":[126],"assesses":[127],"protein":[128],"strength,":[130],"strong":[133],"positive":[134],"Spearman\u2019s":[135],"correlation":[136],"measures.":[141,156],"Furthermore,":[142],"Gene":[143],"Ontology":[144],"analysis":[145],"confirms":[146],"importance":[148],"top":[150],"identified":[152],"by":[153],"our":[154,158],"Notably,":[157],"connectivity":[160],"centrality":[163],"outperform":[165],"their":[166],"counterparts":[168],"other":[170],"identifying":[175]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2025-10-10T00:00:00"}
