{"id":"https://openalex.org/W4313555323","doi":"https://doi.org/10.1109/access.2023.3234294","title":"Efficient Bioinspired Feature Selection and Machine Learning Based Framework Using Omics Data and Biological Knowledge Data Bases in Cancer Clinical Endpoint Prediction","display_name":"Efficient Bioinspired Feature Selection and Machine Learning Based Framework Using Omics Data and Biological Knowledge Data Bases in Cancer Clinical Endpoint Prediction","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4313555323","doi":"https://doi.org/10.1109/access.2023.3234294"},"language":"en","primary_location":{"id":"doi:10.1109/access.2023.3234294","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2023.3234294","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10006725.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10006725.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055399740","display_name":"Im\u00e8ne Zenbout","orcid":"https://orcid.org/0000-0002-5168-2449"},"institutions":[{"id":"https://openalex.org/I4210088961","display_name":"Biotechnology Research Center","ror":"https://ror.org/013t96v18","country_code":"IR","type":"facility","lineage":["https://openalex.org/I163205636","https://openalex.org/I4210088961"]},{"id":"https://openalex.org/I4210160465","display_name":"Universit\u00e9 Constantine 2","ror":"https://ror.org/056mctw68","country_code":"DZ","type":"education","lineage":["https://openalex.org/I4210160465"]}],"countries":["DZ","IR"],"is_corresponding":false,"raw_author_name":"Imene Zenbout","raw_affiliation_strings":["Department of Fundamental Informatics and Its Application, MISC Laboratory, Constantine 2 University Abdelhamid Mehri, Constantine, Algeria","National Biotechnology Research Center (CRBT), Constantine, Algeria"],"raw_orcid":"https://orcid.org/0000-0002-5168-2449","affiliations":[{"raw_affiliation_string":"Department of Fundamental Informatics and Its Application, MISC Laboratory, Constantine 2 University Abdelhamid Mehri, Constantine, Algeria","institution_ids":["https://openalex.org/I4210160465"]},{"raw_affiliation_string":"National Biotechnology Research Center (CRBT), Constantine, Algeria","institution_ids":["https://openalex.org/I4210088961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071367157","display_name":"Abdelkrim Bouramoul","orcid":"https://orcid.org/0000-0002-8628-6817"},"institutions":[{"id":"https://openalex.org/I4210160465","display_name":"Universit\u00e9 Constantine 2","ror":"https://ror.org/056mctw68","country_code":"DZ","type":"education","lineage":["https://openalex.org/I4210160465"]}],"countries":["DZ"],"is_corresponding":false,"raw_author_name":"Abdelkrim Bouramoul","raw_affiliation_strings":["Department of Fundamental Informatics and Its Application, MISC Laboratory, Constantine 2 University Abdelhamid Mehri, Constantine, Algeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Fundamental Informatics and Its Application, MISC Laboratory, Constantine 2 University Abdelhamid Mehri, Constantine, Algeria","institution_ids":["https://openalex.org/I4210160465"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084412445","display_name":"Souham Meshoul","orcid":"https://orcid.org/0000-0002-9072-5878"},"institutions":[{"id":"https://openalex.org/I106778892","display_name":"Princess Nourah bint Abdulrahman University","ror":"https://ror.org/05b0cyh02","country_code":"SA","type":"education","lineage":["https://openalex.org/I106778892"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Souham Meshoul","raw_affiliation_strings":["Department of Information Technology, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia","institution_ids":["https://openalex.org/I106778892"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112336089","display_name":"Mounira Amrane","orcid":null},"institutions":[{"id":"https://openalex.org/I40193446","display_name":"University Ferhat Abbas of Setif","ror":"https://ror.org/02rzqza52","country_code":"DZ","type":"education","lineage":["https://openalex.org/I40193446"]}],"countries":["DZ"],"is_corresponding":false,"raw_author_name":"Mounira Amrane","raw_affiliation_strings":["Biochemistry Department, Setif University Hospital, University Ferhat Abbas Setif 1, Setif, Algeria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biochemistry Department, Setif University Hospital, University Ferhat Abbas Setif 1, Setif, Algeria","institution_ids":["https://openalex.org/I40193446"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":2.4218,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.88691443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"11","issue":null,"first_page":"2674","last_page":"2699"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7194561958312988},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6616351008415222},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6090174317359924},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.594016432762146},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5633446574211121},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.502692461013794},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44228148460388184},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40271827578544617},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.3532307744026184},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.2892271876335144},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11033788323402405}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7194561958312988},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6616351008415222},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6090174317359924},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.594016432762146},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5633446574211121},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.502692461013794},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44228148460388184},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40271827578544617},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.3532307744026184},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.2892271876335144},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11033788323402405},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2023.3234294","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2023.3234294","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10006725.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:cce78ed8fd894e35b94ef04c8ed9f3a8","is_oa":true,"landing_page_url":"https://doaj.org/article/cce78ed8fd894e35b94ef04c8ed9f3a8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 11, Pp 2674-2699 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2023.3234294","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2023.3234294","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10006725.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G867838953","display_name":null,"funder_award_id":"PNURSP2023R196","funder_id":"https://openalex.org/F4320322484","funder_display_name":"Princess Nourah Bint Abdulrahman University"}],"funders":[{"id":"https://openalex.org/F4320322484","display_name":"Princess Nourah Bint Abdulrahman University","ror":"https://ror.org/05b0cyh02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4313555323.pdf","grobid_xml":"https://content.openalex.org/works/W4313555323.grobid-xml"},"referenced_works_count":102,"referenced_works":["https://openalex.org/W14070459","https://openalex.org/W1495061682","https://openalex.org/W1505191356","https://openalex.org/W1536061269","https://openalex.org/W1538131130","https://openalex.org/W1583655194","https://openalex.org/W1609044025","https://openalex.org/W1692174238","https://openalex.org/W1911016507","https://openalex.org/W1970361289","https://openalex.org/W1979340580","https://openalex.org/W2001389054","https://openalex.org/W2003816656","https://openalex.org/W2004915807","https://openalex.org/W2008056655","https://openalex.org/W2008279136","https://openalex.org/W2020089616","https://openalex.org/W2059171260","https://openalex.org/W2061438946","https://openalex.org/W2087025987","https://openalex.org/W2096249757","https://openalex.org/W2114843025","https://openalex.org/W2158485828","https://openalex.org/W2159625780","https://openalex.org/W2159675211","https://openalex.org/W2337422219","https://openalex.org/W2438829874","https://openalex.org/W2622563070","https://openalex.org/W2626414193","https://openalex.org/W2748102707","https://openalex.org/W2751417344","https://openalex.org/W2767768852","https://openalex.org/W2771031544","https://openalex.org/W2778372347","https://openalex.org/W2790108310","https://openalex.org/W2790690278","https://openalex.org/W2796153225","https://openalex.org/W2800559265","https://openalex.org/W2807132016","https://openalex.org/W2889907885","https://openalex.org/W2903770906","https://openalex.org/W2903808414","https://openalex.org/W2906484232","https://openalex.org/W2908201961","https://openalex.org/W2911580600","https://openalex.org/W2912320302","https://openalex.org/W2919115771","https://openalex.org/W2928409702","https://openalex.org/W2946382924","https://openalex.org/W2949857618","https://openalex.org/W2959756585","https://openalex.org/W2961375208","https://openalex.org/W2969167544","https://openalex.org/W2973502062","https://openalex.org/W2983382680","https://openalex.org/W2993260471","https://openalex.org/W2995215286","https://openalex.org/W2997022986","https://openalex.org/W2997482873","https://openalex.org/W2999096842","https://openalex.org/W2999309192","https://openalex.org/W3005520922","https://openalex.org/W3015295246","https://openalex.org/W3029717128","https://openalex.org/W3031003892","https://openalex.org/W3037575062","https://openalex.org/W3042099685","https://openalex.org/W3045587924","https://openalex.org/W3085148301","https://openalex.org/W3092913069","https://openalex.org/W3093258501","https://openalex.org/W3104219746","https://openalex.org/W3112600195","https://openalex.org/W3126232929","https://openalex.org/W3126272831","https://openalex.org/W3129236693","https://openalex.org/W3135857691","https://openalex.org/W3138934519","https://openalex.org/W3139397034","https://openalex.org/W3151381390","https://openalex.org/W3153947394","https://openalex.org/W3157031827","https://openalex.org/W3158093072","https://openalex.org/W3167344305","https://openalex.org/W3173174434","https://openalex.org/W3176904497","https://openalex.org/W3193479171","https://openalex.org/W3195038684","https://openalex.org/W3198873785","https://openalex.org/W3207033214","https://openalex.org/W3215570913","https://openalex.org/W4226292667","https://openalex.org/W4244895750","https://openalex.org/W4253485833","https://openalex.org/W4283579831","https://openalex.org/W4288436642","https://openalex.org/W4289883804","https://openalex.org/W6607259140","https://openalex.org/W6629652716","https://openalex.org/W6631216910","https://openalex.org/W6639103823","https://openalex.org/W6738560588"],"related_works":["https://openalex.org/W3013693939","https://openalex.org/W2566616303","https://openalex.org/W2669956259","https://openalex.org/W4249005693","https://openalex.org/W4392946183","https://openalex.org/W4405887298","https://openalex.org/W2943300910","https://openalex.org/W4386564352","https://openalex.org/W2952668426","https://openalex.org/W3028106195"],"abstract_inverted_index":{"Cancer":[0],"Research":[1],"has":[2],"advanced":[3],"during":[4],"the":[5,31,47,58,78,92,166,169,179,182,196,214,223,226,234,253],"past":[6],"few":[7],"years.":[8],"Using":[9],"high":[10,41],"throughput":[11],"technology":[12],"and":[13,26,33,37,43,63,68,103,122,145,193,203,221,229,237,244,263],"advances":[14],"in":[15,106,186,213,239,258],"artificial":[16],"intelligence,":[17],"it":[18],"is":[19],"now":[20],"possible":[21],"to":[22,57,108,116,164,210,232],"improve":[23],"cancer":[24,66,265],"diagnosis":[25,67],"targeted":[27],"therapy,":[28],"by":[29,96],"integrating":[30],"investigation":[32],"analysis":[34],"of":[35,46,49,60,130,168,181,188,225,241,256],"clinical":[36,154],"omics":[38],"profiles.":[39],"The":[40,127,206,216],"dimensionality":[42],"class":[44],"imbalance":[45],"majority":[48],"available":[50],"data":[51,75],"sets":[52],"represent":[53],"a":[54,85,113,134,146],"serious":[55],"challenge":[56],"development":[59],"computational":[61],"methods":[62,212],"tools":[64],"for":[65,89,142,153,173],"biomarker":[69],"discovery.":[70],"Taking":[71],"into":[72],"account":[73],"multi-omics":[74],"further":[76],"complicates":[77],"undertaking.":[79],"In":[80,247],"this":[81,131],"paper,":[82],"we":[83],"describe":[84],"five-step":[86],"integrative":[87],"architecture":[88,132],"dealing":[90],"with":[91,112,252],"three":[93],"aforementioned":[94],"problems":[95],"incorporating":[97],"proteomics":[98],"data,":[99],"protein-protein":[100],"interaction":[101],"networks,":[102],"signaling":[104],"pathways":[105],"order":[107],"identify":[109],"protein":[110],"biomarkers":[111],"direct":[114],"association":[115],"cancerous":[117],"patients\u2019":[118],"overall":[119],"survival":[120],"(OS)":[121],"progression":[123],"free":[124],"interval":[125],"(PFI).":[126],"core":[128],"parts":[129],"are":[133,218],"cluster":[135],"based":[136],"grey":[137],"wolf":[138],"optimization":[139,171],"algorithm":[140,172],"(CB-GWO)":[141],"feature":[143,174],"selection":[144],"deep":[147,183],"stacked":[148],"canonical":[149],"correlation":[150,191],"autoencoder":[151],"(DSCC-AE)":[152],"endpoint":[155],"prediction.":[156],"A":[157],"thorough":[158],"experimental":[159],"study":[160],"was":[161],"carried":[162],"out":[163],"evaluate":[165],"performance":[167,180],"proposed":[170,227],"selection,":[175],"as":[176,178],"well":[177],"learning":[184],"model":[185],"terms":[187,240],"Mathew":[189],"coefficient":[190],"(MCC)":[192],"Area":[194],"under":[195],"curve":[197],"(AUC)":[198],"on":[199],"breast,":[200],"lung,":[201],"colon,":[202],"rectum":[204],"cancers.":[205],"results":[207,217],"were":[208],"compared":[209],"other":[211,235],"literature.":[215],"very":[219],"promising":[220],"show":[222],"effectiveness":[224],"framework":[228],"its":[230],"ability":[231],"outperform":[233],"algorithms":[236],"models":[238],"AUC":[242],"(0.91)":[243],"MCC":[245],"(0.64).":[246],"addition,":[248],"hub":[249],"marker":[250],"genes":[251],"potential":[254],"occurence":[255],"alterations":[257],"colorectal":[259],"cancer,":[260,262],"breast":[261],"lung":[264],"have":[266],"been":[267],"identified.":[268]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
