{"id":"https://openalex.org/W2612129877","doi":"https://doi.org/10.1109/wsc.2017.8247841","title":"DiSH simulator: Capturing dynamics of cellular signaling with heterogeneous knowledge","display_name":"DiSH simulator: Capturing dynamics of cellular signaling with heterogeneous knowledge","publication_year":2017,"publication_date":"2017-12-01","ids":{"openalex":"https://openalex.org/W2612129877","doi":"https://doi.org/10.1109/wsc.2017.8247841","mag":"2612129877"},"language":"en","primary_location":{"id":"doi:10.1109/wsc.2017.8247841","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2017.8247841","pdf_url":null,"source":{"id":"https://openalex.org/S4363607803","display_name":"2017 Winter Simulation Conference (WSC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 Winter Simulation Conference (WSC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024140128","display_name":"Khaled Sayed","orcid":"https://orcid.org/0000-0002-1252-3170"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Khaled Sayed","raw_affiliation_strings":["Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102964085","display_name":"Yu\u2010Hsin Kuo","orcid":"https://orcid.org/0000-0003-0239-1941"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu-Hsin Kuo","raw_affiliation_strings":["Language Technologies Institute, Carnegie Mellon University, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Language Technologies Institute, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078947104","display_name":"Anuva Kulkarni","orcid":"https://orcid.org/0000-0001-8896-7504"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anuva Kulkarni","raw_affiliation_strings":["Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017141796","display_name":"Nata\u0161a Mi\u0161kov-\u017divanov","orcid":"https://orcid.org/0000-0003-1110-3403"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natasa Miskov-Zivanov","raw_affiliation_strings":["Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5024140128"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":null,"apc_paid":null,"fwci":8.4059,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.97983871,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"896","last_page":"907"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6606405377388},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5852742791175842},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.4561966061592102},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.45045098662376404},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0710996687412262}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6606405377388},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5852742791175842},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.4561966061592102},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.45045098662376404},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0710996687412262},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/wsc.2017.8247841","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2017.8247841","pdf_url":null,"source":{"id":"https://openalex.org/S4363607803","display_name":"2017 Winter Simulation Conference (WSC)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 Winter Simulation Conference (WSC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.7900000214576721,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W256129609","https://openalex.org/W274082653","https://openalex.org/W1892851289","https://openalex.org/W1981268612","https://openalex.org/W1984818254","https://openalex.org/W2014566660","https://openalex.org/W2035700463","https://openalex.org/W2054039423","https://openalex.org/W2062029454","https://openalex.org/W2069233518","https://openalex.org/W2090020814","https://openalex.org/W2103031848","https://openalex.org/W2103454055","https://openalex.org/W2103723044","https://openalex.org/W2106030214","https://openalex.org/W2118803783","https://openalex.org/W2119530812","https://openalex.org/W2121525198","https://openalex.org/W2123575898","https://openalex.org/W2124082948","https://openalex.org/W2148661959","https://openalex.org/W2155418451","https://openalex.org/W2157573465","https://openalex.org/W2175715045","https://openalex.org/W2273647512","https://openalex.org/W2566678598","https://openalex.org/W2594443977","https://openalex.org/W3105538867"],"related_works":["https://openalex.org/W2045456578","https://openalex.org/W2076610045","https://openalex.org/W2918883224","https://openalex.org/W3106945349","https://openalex.org/W3204394973","https://openalex.org/W2278205256","https://openalex.org/W2883555950","https://openalex.org/W4246426965","https://openalex.org/W2051154247","https://openalex.org/W3005892291"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3],"present":[4],"DiSH,":[5],"a":[6,115],"simulator":[7,31],"for":[8,64],"large":[9],"discrete":[10],"models":[11,103],"of":[12,18,35,80,104,114],"biological":[13,125],"signal":[14],"transduction":[15],"pathways,":[16],"capable":[17],"simulating":[19],"networks":[20],"with":[21],"multi-valued":[22],"elements":[23],"in":[24,45,66,82,87],"both":[25],"deterministic":[26,71],"and":[27,43,48,58,72,75,94,101,131],"stochastic":[28,73],"manner.":[29],"The":[30],"incorporates":[32],"the":[33,54,78],"timing":[34],"molecular":[36],"reactions,":[37],"which":[38],"are":[39],"often":[40],"not":[41],"synchronized":[42],"occur":[44],"random":[46],"order,":[47],"it":[49,76],"also":[50,62,109],"takes":[51],"into":[52],"account":[53],"difference":[55],"between":[56],"slow":[57],"fast":[59],"reactions.":[60],"DiSH":[61,90],"allows":[63],"changes":[65],"conditions":[67],"during":[68],"simulations,":[69],"combined":[70],"changes,":[74],"uses":[77],"concept":[79],"delays":[81,86],"models,":[83],"similar":[84],"to":[85,98],"digital":[88],"circuits.":[89],"is":[91,108],"publicly":[92],"available":[93],"has":[95],"been":[96],"used":[97,111],"study":[99],"intra-":[100],"inter-cellular":[102],"several":[105],"diseases.":[106],"It":[107],"being":[110],"as":[112],"part":[113],"larger":[116],"architecture":[117],"including":[118],"natural":[119],"language":[120],"processing":[121],"tools":[122],"that":[123],"read":[124],"literature,":[126],"automated":[127],"model":[128,133],"assembly":[129],"tools,":[130],"formal":[132],"analysis":[134],"tools.":[135]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
