{"id":"https://openalex.org/W3139368929","doi":"https://doi.org/10.1109/wsc.2010.5679126","title":"VERIFICATION AND TESTING OF BIOLOGICAL MODELS","display_name":"VERIFICATION AND TESTING OF BIOLOGICAL MODELS","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W3139368929","doi":"https://doi.org/10.1109/wsc.2010.5679126","mag":"3139368929"},"language":"en","primary_location":{"id":"doi:10.1109/wsc.2010.5679126","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2010.5679126","pdf_url":null,"source":{"id":"https://openalex.org/S4363608948","display_name":"Proceedings of the 2010 Winter Simulation Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 Winter Simulation Conference","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073529749","display_name":"Allan Clark","orcid":"https://orcid.org/0000-0003-2965-8941"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Allan Clark","raw_affiliation_strings":["School of Informatics, University of Edinburgh, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035860397","display_name":"Jane Hillston","orcid":"https://orcid.org/0000-0003-4914-9255"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jane Hillston","raw_affiliation_strings":["School of Informatics, University of Edinburgh, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000114432","display_name":"Stephen Gilmore","orcid":"https://orcid.org/0000-0002-3657-989X"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephen Gilmore","raw_affiliation_strings":["School of Informatics, University of Edinburgh, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh, Edinburgh, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108592838","display_name":"Peter Kemper","orcid":null},"institutions":[{"id":"https://openalex.org/I16285277","display_name":"William & Mary","ror":"https://ror.org/03hsf0573","country_code":"US","type":"education","lineage":["https://openalex.org/I16285277"]},{"id":"https://openalex.org/I267592682","display_name":"Williams (United States)","ror":"https://ror.org/007zhvp17","country_code":"US","type":"company","lineage":["https://openalex.org/I267592682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter Kemper","raw_affiliation_strings":["Department of Computer Science, College of William and Mary, Williamsburg, VA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, College of William and Mary, Williamsburg, VA, USA","institution_ids":["https://openalex.org/I16285277","https://openalex.org/I267592682"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"9","issue":null,"first_page":"620","last_page":"630"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7467226982116699},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.6787471175193787},{"id":"https://openalex.org/keywords/discrete-event-simulation","display_name":"Discrete event simulation","score":0.658771276473999},{"id":"https://openalex.org/keywords/modeling-and-simulation","display_name":"Modeling and simulation","score":0.49168115854263306},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3688220977783203},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.321744441986084},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.2088303565979004}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7467226982116699},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.6787471175193787},{"id":"https://openalex.org/C147203929","wikidata":"https://www.wikidata.org/wiki/Q574814","display_name":"Discrete event simulation","level":2,"score":0.658771276473999},{"id":"https://openalex.org/C167343916","wikidata":"https://www.wikidata.org/wiki/Q6888384","display_name":"Modeling and simulation","level":2,"score":0.49168115854263306},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3688220977783203},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.321744441986084},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.2088303565979004},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/wsc.2010.5679126","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2010.5679126","pdf_url":null,"source":{"id":"https://openalex.org/S4363608948","display_name":"Proceedings of the 2010 Winter Simulation Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2010 Winter Simulation Conference","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.307.8113","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.307.8113","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://homepages.inf.ed.ac.uk/stg/publications/wsc2010.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.416.4514","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.416.4514","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.informs-sim.org/wsc10papers/056.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1947253272","display_name":null,"funder_award_id":"EP/E031439/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2160003213","display_name":null,"funder_award_id":"BB/D019621/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1505674917","https://openalex.org/W1514014274","https://openalex.org/W1525744498","https://openalex.org/W1587845087","https://openalex.org/W1591890109","https://openalex.org/W1635357449","https://openalex.org/W1964012101","https://openalex.org/W1983350265","https://openalex.org/W2030102144","https://openalex.org/W2041509965","https://openalex.org/W2050603329","https://openalex.org/W2078734278","https://openalex.org/W2084924279","https://openalex.org/W2148895036","https://openalex.org/W2155418451","https://openalex.org/W2158458407","https://openalex.org/W2166565152","https://openalex.org/W2284263109","https://openalex.org/W2462326848","https://openalex.org/W3138865660","https://openalex.org/W4210827858","https://openalex.org/W4251141266","https://openalex.org/W6630645230","https://openalex.org/W6635250474","https://openalex.org/W6655339495","https://openalex.org/W6718931385"],"related_works":["https://openalex.org/W3129999610","https://openalex.org/W2539196186","https://openalex.org/W2479994370","https://openalex.org/W1843664951","https://openalex.org/W2104291236","https://openalex.org/W1537666772","https://openalex.org/W23715682","https://openalex.org/W1985625569","https://openalex.org/W2025926587","https://openalex.org/W2105908646"],"abstract_inverted_index":{"Simulation":[0],"modeling":[1,24,36],"in":[2,47,62],"systems":[3],"biology":[4],"embarks":[5],"on":[6],"discrete":[7],"event":[8],"simulation":[9,21,32],"only":[10],"for":[11,40],"cases":[12],"of":[13,16,31,67],"small":[14],"cardinalities":[15],"entities":[17],"and":[18,49,53,65,75],"uses":[19],"continuous":[20],"otherwise.":[22],"Modern":[23],"environments":[25],"like":[26],"Bio-PEPA":[27],"support":[28],"both":[29],"types":[30],"within":[33],"a":[34,68,83,87],"single":[35],"formalism.":[37],"Developing":[38],"models":[39],"complex":[41],"dynamic":[42],"phenomena":[43],"is":[44],"not":[45],"trivial":[46],"practice":[48],"requires":[50],"careful":[51],"verification":[52,64],"testing.":[54],"In":[55],"this":[56],"paper,":[57],"we":[58],"describe":[59],"relevant":[60],"steps":[61],"the":[63],"testing":[66],"TNF\u03b1-mediated":[69],"NF-\u03baB":[70],"signal":[71],"transduction":[72],"pathway":[73],"model":[74],"discuss":[76],"to":[77,85],"what":[78],"extent":[79],"automated":[80],"techniques":[81],"help":[82],"practitioner":[84],"derive":[86],"suitable":[88],"model.":[89]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
