{"id":"https://openalex.org/W3147047397","doi":"https://doi.org/10.1109/wsc.2007.4419683","title":"Combining micro and macro-modeling in DEVS for computational biology","display_name":"Combining micro and macro-modeling in DEVS for computational biology","publication_year":2007,"publication_date":"2007-12-01","ids":{"openalex":"https://openalex.org/W3147047397","doi":"https://doi.org/10.1109/wsc.2007.4419683","mag":"3147047397"},"language":"en","primary_location":{"id":"doi:10.1109/wsc.2007.4419683","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2007.4419683","pdf_url":null,"source":{"id":"https://openalex.org/S4363608517","display_name":"2007 Winter Simulation Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 Winter Simulation Conference","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063515034","display_name":"Adelinde M. Uhrmacher","orcid":"https://orcid.org/0000-0001-5256-4682"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Adelinde M. Uhrmacher","raw_affiliation_strings":["Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016276885","display_name":"Roland Ewald","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roland Ewald","raw_affiliation_strings":["Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103430021","display_name":"Mathias John","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mathias John","raw_affiliation_strings":["Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077806089","display_name":"Carsten Maus","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carsten Maus","raw_affiliation_strings":["Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035808972","display_name":"Matthias Jeschke","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Jeschke","raw_affiliation_strings":["Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044773386","display_name":"Susanne Biermann","orcid":null},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Susanne Biermann","raw_affiliation_strings":["Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Modeling and Simulation Laboratory, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.6815,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.96199525,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"871","last_page":"880"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/macro","display_name":"Macro","score":0.9272892475128174},{"id":"https://openalex.org/keywords/devs","display_name":"DEVS","score":0.9244290590286255},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7114753127098083},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.6732739210128784},{"id":"https://openalex.org/keywords/micro-level","display_name":"Micro level","score":0.5206381678581238},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4995255470275879},{"id":"https://openalex.org/keywords/causation","display_name":"Causation","score":0.4842359721660614},{"id":"https://openalex.org/keywords/macro-level","display_name":"Macro level","score":0.47219622135162354},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3268236517906189},{"id":"https://openalex.org/keywords/modeling-and-simulation","display_name":"Modeling and simulation","score":0.26279473304748535},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22486278414726257},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.21383342146873474},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0952538549900055}],"concepts":[{"id":"https://openalex.org/C166955791","wikidata":"https://www.wikidata.org/wiki/Q629579","display_name":"Macro","level":2,"score":0.9272892475128174},{"id":"https://openalex.org/C68757728","wikidata":"https://www.wikidata.org/wiki/Q911082","display_name":"DEVS","level":3,"score":0.9244290590286255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7114753127098083},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.6732739210128784},{"id":"https://openalex.org/C3018162585","wikidata":"https://www.wikidata.org/wiki/Q254624","display_name":"Micro level","level":3,"score":0.5206381678581238},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4995255470275879},{"id":"https://openalex.org/C166151441","wikidata":"https://www.wikidata.org/wiki/Q4923601","display_name":"Causation","level":2,"score":0.4842359721660614},{"id":"https://openalex.org/C3017399102","wikidata":"https://www.wikidata.org/wiki/Q397254","display_name":"Macro level","level":2,"score":0.47219622135162354},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3268236517906189},{"id":"https://openalex.org/C167343916","wikidata":"https://www.wikidata.org/wiki/Q6888384","display_name":"Modeling and simulation","level":2,"score":0.26279473304748535},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22486278414726257},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.21383342146873474},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0952538549900055},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C74363100","wikidata":"https://www.wikidata.org/wiki/Q273005","display_name":"Economic system","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C147176958","wikidata":"https://www.wikidata.org/wiki/Q77590","display_name":"Civil engineering","level":1,"score":0.0},{"id":"https://openalex.org/C188897","wikidata":"https://www.wikidata.org/wiki/Q5333508","display_name":"Economic impact analysis","level":2,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/wsc.2007.4419683","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2007.4419683","pdf_url":null,"source":{"id":"https://openalex.org/S4363608517","display_name":"2007 Winter Simulation Conference","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 Winter Simulation Conference","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.172.2330","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.172.2330","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.informs-sim.org/wsc07papers/102.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1506560429","https://openalex.org/W1541027160","https://openalex.org/W1554646488","https://openalex.org/W1573344143","https://openalex.org/W1587845087","https://openalex.org/W1974048672","https://openalex.org/W1974332708","https://openalex.org/W1978486653","https://openalex.org/W2003404630","https://openalex.org/W2007362474","https://openalex.org/W2017917263","https://openalex.org/W2019670237","https://openalex.org/W2058221907","https://openalex.org/W2066067593","https://openalex.org/W2075416920","https://openalex.org/W2099529102","https://openalex.org/W2102653059","https://openalex.org/W2106097745","https://openalex.org/W2106937495","https://openalex.org/W2111682035","https://openalex.org/W2126270278","https://openalex.org/W2126491615","https://openalex.org/W2147083212","https://openalex.org/W2155418451","https://openalex.org/W2163170981","https://openalex.org/W2163855763","https://openalex.org/W2284263109","https://openalex.org/W3151150671","https://openalex.org/W4239549715","https://openalex.org/W4248868925","https://openalex.org/W4251405748","https://openalex.org/W6630363402","https://openalex.org/W6632566724","https://openalex.org/W6634272870","https://openalex.org/W6635250474","https://openalex.org/W6650777032","https://openalex.org/W6673588860","https://openalex.org/W6681871261"],"related_works":["https://openalex.org/W2019109360","https://openalex.org/W2378343024","https://openalex.org/W2196624492","https://openalex.org/W3147047397","https://openalex.org/W2102606643","https://openalex.org/W1968757058","https://openalex.org/W2257239200","https://openalex.org/W4200464548","https://openalex.org/W2092254766","https://openalex.org/W2319783895"],"abstract_inverted_index":{"In":[0],"computational":[1],"biology":[2],"there":[3],"is":[4,111,120],"an":[5,43,114,124],"increasing":[6],"need":[7],"to":[8,22,94],"combine":[9],"micro":[10,24,49,59,64,77],"and":[11,25,28,31,48,61,74,103,117],"macro":[12,26,47,53,72,84],"views":[13],"of":[14,17,46,108,127],"the":[15,29,71,76,81,109,128],"system":[16],"interest.":[18],"Therefore,":[19],"explicit":[20,44],"means":[21],"describe":[23],"level":[27,54,60],"downward":[30],"upward":[32],"causation":[33],"that":[34],"link":[35,87],"both":[36,88],"are":[37,92],"required.":[38],"Multi-Level-DEVS":[39],"(or":[40],"m^-DEVS)":[41],"supports":[42],"description":[45],"level,":[50],"information":[51],"at":[52,83],"can":[55,66,79],"be":[56,67],"accessed":[57],"from":[58],"vice":[62],"versa,":[63],"models":[65,78],"synchronously":[68],"activated":[69],"by":[70,113],"model":[73],"also":[75],"trigger":[80],"dynamics":[82],"level.":[85],"To":[86],"levels,":[89],"different":[90],"methods":[91],"combined,":[93],"those":[95],"belong,":[96],"value":[97],"coupling,":[98],"synchronous":[99],"activations,":[100],"variable":[101],"ports,":[102],"invariants.":[104],"The":[105],"execution":[106],"semantic":[107],"formalism":[110],"given":[112],"abstract":[115],"simulator":[116],"its":[118],"use":[119],"illustrated":[121],"based":[122],"on":[123],"small":[125],"extract":[126],"Wnt":[129],"pathway.":[130]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
