{"id":"https://openalex.org/W3141311943","doi":"https://doi.org/10.1109/wsc.2003.1261496","title":"Improving the development process for eukaryotic cell cycle models with a modeling support environment","display_name":"Improving the development process for eukaryotic cell cycle models with a modeling support environment","publication_year":2004,"publication_date":"2004-05-06","ids":{"openalex":"https://openalex.org/W3141311943","doi":"https://doi.org/10.1109/wsc.2003.1261496","mag":"3141311943"},"language":"en","primary_location":{"id":"doi:10.1109/wsc.2003.1261496","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2003.1261496","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2003 International Conference on Machine Learning and Cybernetics (IEEE Cat. No.03EX693)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020967460","display_name":"Nicholas Allen","orcid":"https://orcid.org/0000-0002-7651-0811"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"N.A. Allen","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012542741","display_name":"Clifford A. Shaffer","orcid":"https://orcid.org/0000-0003-0001-0295"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C.A. Shaffer","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068597749","display_name":"Marc T. Vass","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.T. Vass","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035052603","display_name":"Naren Ramakrishnan","orcid":"https://orcid.org/0000-0002-1821-9743"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Ramakrishnan","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068161656","display_name":"Layne T. Watson","orcid":"https://orcid.org/0000-0003-2009-107X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L.T. Watson","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5020967460"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":null,"apc_paid":null,"fwci":0.3508,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.58822482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"782","last_page":"790"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6703195571899414},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.6462347507476807},{"id":"https://openalex.org/keywords/process-modeling","display_name":"Process modeling","score":0.5514904856681824},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5387585759162903},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4755396842956543},{"id":"https://openalex.org/keywords/work-in-process","display_name":"Work in process","score":0.35293692350387573},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.34906691312789917},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.32063472270965576},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.17981362342834473},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07415935397148132}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6703195571899414},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.6462347507476807},{"id":"https://openalex.org/C76956256","wikidata":"https://www.wikidata.org/wiki/Q27610560","display_name":"Process modeling","level":3,"score":0.5514904856681824},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5387585759162903},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4755396842956543},{"id":"https://openalex.org/C174998907","wikidata":"https://www.wikidata.org/wiki/Q357662","display_name":"Work in process","level":2,"score":0.35293692350387573},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.34906691312789917},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.32063472270965576},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17981362342834473},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07415935397148132},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/wsc.2003.1261496","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wsc.2003.1261496","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of the 2003 International Conference on Machine Learning and Cybernetics (IEEE Cat. No.03EX693)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320338294","display_name":"Air Force Research Laboratory","ror":"https://ror.org/02e2egq70"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W6905619","https://openalex.org/W1544407491","https://openalex.org/W1964287788","https://openalex.org/W1971263535","https://openalex.org/W2027312650","https://openalex.org/W2040890820","https://openalex.org/W2054887782","https://openalex.org/W2060147741","https://openalex.org/W2065981245","https://openalex.org/W2088613743","https://openalex.org/W2091161585","https://openalex.org/W2105562868","https://openalex.org/W2112610155","https://openalex.org/W2112651905","https://openalex.org/W2113741278","https://openalex.org/W2119571991","https://openalex.org/W2126238221","https://openalex.org/W2129711193","https://openalex.org/W2138258855","https://openalex.org/W2139608560","https://openalex.org/W2150690821","https://openalex.org/W2150908245","https://openalex.org/W2159824422","https://openalex.org/W2162320938","https://openalex.org/W4239764641","https://openalex.org/W4245531198","https://openalex.org/W4246477462","https://openalex.org/W6600295013","https://openalex.org/W6632647651","https://openalex.org/W6680315074"],"related_works":["https://openalex.org/W2295079537","https://openalex.org/W2808121504","https://openalex.org/W953697561","https://openalex.org/W2772268001","https://openalex.org/W181719207","https://openalex.org/W2238636028","https://openalex.org/W2385915069","https://openalex.org/W2062822655","https://openalex.org/W2185733045","https://openalex.org/W2027498238"],"abstract_inverted_index":{"Biological":[0],"pathway":[1],"modelers":[2],"attempt":[3],"to":[4,24,33,68,91],"describe":[5,66],"cellular":[6],"processes":[7],"and":[8,13,31,54,97,100],"regulatory":[9],"networks":[10],"with":[11],"continuous":[12],"discrete":[14],"models":[15,27,35,75],"of":[16,82],"the":[17,43,69,79,83,105],"cell":[18,62,73],"cycle.":[19],"Previous":[20],"practice":[21],"has":[22],"been":[23],"develop":[25],"these":[26],"largely":[28],"by":[29,37,76],"hand,":[30],"then":[32],"validate":[34],"primarily":[36],"comparing":[38],"time":[39],"series":[40],"plots":[41],"versus":[42],"observed":[44],"experimental":[45],"results.":[46],"This":[47],"paper":[48],"reports":[49],"our":[50],"experiences":[51],"in":[52],"designing":[53],"building":[55,99],"a":[56,93],"modeling":[57,85,95,107],"support":[58],"environment":[59],"(MSE)":[60],"for":[61,72],"cycle":[63,74],"models.":[64],"We":[65],"improvements":[67],"development":[70],"process":[71],"(a)":[77],"identifying":[78],"key":[80],"elements":[81],"existing":[84],"process,":[86,96],"(b)":[87],"applying":[88],"simulation":[89],"methodology":[90],"construct":[92],"revised":[94,106],"(c)":[98],"testing":[101],"software":[102],"that":[103],"supports":[104],"process.":[108]},"counts_by_year":[],"updated_date":"2026-02-25T21:11:00.739837","created_date":"2025-10-10T00:00:00"}
