{"id":"https://openalex.org/W2105192444","doi":"https://doi.org/10.1109/wacv.2009.5403112","title":"Automatic analysis of flourescence labeled neurites in microscope images","display_name":"Automatic analysis of flourescence labeled neurites in microscope images","publication_year":2009,"publication_date":"2009-12-01","ids":{"openalex":"https://openalex.org/W2105192444","doi":"https://doi.org/10.1109/wacv.2009.5403112","mag":"2105192444"},"language":"en","primary_location":{"id":"doi:10.1109/wacv.2009.5403112","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wacv.2009.5403112","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 Workshop on Applications of Computer Vision (WACV)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058151791","display_name":"Danny Misiak","orcid":"https://orcid.org/0000-0001-5931-8425"},"institutions":[{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Danny Misiak","raw_affiliation_strings":["ZAMED, Faculty of Medicine, Martin Luther University of Halle-Wittenberg, Halle, Germany","ZAMED, Faculty of Medicine, Martin Luther University Halle-Wittenberg, (Saale), Germany"],"affiliations":[{"raw_affiliation_string":"ZAMED, Faculty of Medicine, Martin Luther University of Halle-Wittenberg, Halle, Germany","institution_ids":["https://openalex.org/I68956291"]},{"raw_affiliation_string":"ZAMED, Faculty of Medicine, Martin Luther University Halle-Wittenberg, (Saale), Germany","institution_ids":["https://openalex.org/I68956291"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019561227","display_name":"Stefan Posch","orcid":"https://orcid.org/0000-0002-2688-8701"},"institutions":[{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Posch","raw_affiliation_strings":["Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany","Inst. of Comput. Sci., Martin Luther Univ. Halle-Wittenberg, Saale, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany","institution_ids":["https://openalex.org/I68956291"]},{"raw_affiliation_string":"Inst. of Comput. Sci., Martin Luther Univ. Halle-Wittenberg, Saale, Germany","institution_ids":["https://openalex.org/I68956291"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067431015","display_name":"Nadine St\u00f6hr","orcid":null},"institutions":[{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nadine Stohr","raw_affiliation_strings":["ZAMED, Faculty of Medicine, Martin Luther University of Halle-Wittenberg, Halle, Germany","ZAMED, Faculty of Medicine, Martin Luther University Halle-Wittenberg, (Saale), Germany"],"affiliations":[{"raw_affiliation_string":"ZAMED, Faculty of Medicine, Martin Luther University of Halle-Wittenberg, Halle, Germany","institution_ids":["https://openalex.org/I68956291"]},{"raw_affiliation_string":"ZAMED, Faculty of Medicine, Martin Luther University Halle-Wittenberg, (Saale), Germany","institution_ids":["https://openalex.org/I68956291"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065864748","display_name":"Stefan H\u00fcttelmaier","orcid":"https://orcid.org/0000-0001-9335-4227"},"institutions":[{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Huttelmaier","raw_affiliation_strings":["ZAMED, Faculty of Medicine, Martin Luther University of Halle-Wittenberg, Halle, Germany","ZAMED, Faculty of Medicine, Martin Luther University Halle-Wittenberg, (Saale), Germany"],"affiliations":[{"raw_affiliation_string":"ZAMED, Faculty of Medicine, Martin Luther University of Halle-Wittenberg, Halle, Germany","institution_ids":["https://openalex.org/I68956291"]},{"raw_affiliation_string":"ZAMED, Faculty of Medicine, Martin Luther University Halle-Wittenberg, (Saale), Germany","institution_ids":["https://openalex.org/I68956291"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043395573","display_name":"Birgit M\u00f6ller","orcid":"https://orcid.org/0000-0002-7146-043X"},"institutions":[{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Birgit Moller","raw_affiliation_strings":["Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany","Inst. of Comput. Sci., Martin Luther Univ. Halle-Wittenberg, Saale, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany","institution_ids":["https://openalex.org/I68956291"]},{"raw_affiliation_string":"Inst. of Comput. Sci., Martin Luther Univ. Halle-Wittenberg, Saale, Germany","institution_ids":["https://openalex.org/I68956291"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5058151791"],"corresponding_institution_ids":["https://openalex.org/I68956291"],"apc_list":null,"apc_paid":null,"fwci":0.3728,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.77898551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"7","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neurite","display_name":"Neurite","score":0.8551818132400513},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.771360456943512},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.687207818031311},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6824464201927185},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5603447556495667},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.547235369682312},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4788905680179596},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.47725459933280945},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.44541269540786743},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.42286768555641174},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3454219698905945},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2839374542236328},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.21061944961547852},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.149448424577713},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1113688051700592},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09283438324928284},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.07512333989143372}],"concepts":[{"id":"https://openalex.org/C113246987","wikidata":"https://www.wikidata.org/wiki/Q1534415","display_name":"Neurite","level":3,"score":0.8551818132400513},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.771360456943512},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.687207818031311},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6824464201927185},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5603447556495667},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.547235369682312},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4788905680179596},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.47725459933280945},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.44541269540786743},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.42286768555641174},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3454219698905945},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2839374542236328},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.21061944961547852},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.149448424577713},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1113688051700592},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09283438324928284},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.07512333989143372},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/wacv.2009.5403112","is_oa":false,"landing_page_url":"https://doi.org/10.1109/wacv.2009.5403112","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 Workshop on Applications of Computer Vision (WACV)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1600276254","https://openalex.org/W1974954013","https://openalex.org/W2032440099","https://openalex.org/W2039367092","https://openalex.org/W2071598318","https://openalex.org/W2091549056","https://openalex.org/W2093834886","https://openalex.org/W2101977158","https://openalex.org/W2104095591","https://openalex.org/W2116040950","https://openalex.org/W2138114100","https://openalex.org/W2142659995","https://openalex.org/W2145803225","https://openalex.org/W2159808795","https://openalex.org/W2161065048","https://openalex.org/W2162710887","https://openalex.org/W2166530541","https://openalex.org/W2168750565","https://openalex.org/W2169931542","https://openalex.org/W2341512478","https://openalex.org/W2998023265","https://openalex.org/W3211330693","https://openalex.org/W4285719527","https://openalex.org/W6635900570","https://openalex.org/W6675029737"],"related_works":["https://openalex.org/W4211107619","https://openalex.org/W2894139091","https://openalex.org/W2161433272","https://openalex.org/W2315436027","https://openalex.org/W1637909","https://openalex.org/W659245948","https://openalex.org/W2094643072","https://openalex.org/W4206210906","https://openalex.org/W2087957833","https://openalex.org/W2793462084"],"abstract_inverted_index":{"Microscope":[0],"imaging":[1],"technologies":[2],"have":[3],"turned":[4],"out":[5],"to":[6],"yield":[7],"an":[8],"indispensable":[9],"tool":[10],"in":[11,60],"modern":[12],"biomedical":[13,138],"research.":[14,139],"Combined":[15],"with":[16],"fluorescence":[17],"labeling":[18],"techniques":[19],"they":[20],"not":[21],"only":[22],"provide":[23],"new":[24,66],"perspectives":[25],"on":[26,35,100],"tissues":[27],"and":[28,41,67,74,89],"cells":[29],"as":[30,118,120],"a":[31,65,125],"whole,":[32],"but":[33],"also":[34],"processes":[36],"at":[37],"the":[38,93,131],"cellular":[39],"level,":[40],"will":[42],"be":[43],"one":[44],"important":[45],"experimental":[46],"technique":[47,78],"of":[48,57,82,127,133],"systems":[49],"biology.":[50],"To":[51],"handle":[52],"this":[53,61],"steadily":[54],"increasing":[55],"amount":[56],"image":[58],"data,":[59],"paper":[62],"we":[63],"propose":[64],"fully":[68],"automatic":[69,83],"approach":[70,135],"for":[71,136],"neurite":[72,87,110],"segmentation":[73,88,111,116],"protein":[75,90,121],"quantification.":[76],"Our":[77],"combines":[79],"three":[80],"phases":[81],"neuron":[84],"cell":[85],"localization,":[86],"analysis.":[91],"In":[92],"second":[94],"stage":[95],"active":[96],"contour":[97],"models":[98],"based":[99],"hierarchical":[101],"gradient":[102],"vector":[103],"flow":[104],"fields":[105],"are":[106],"employed,":[107],"enabling":[108],"precise":[109],"despite":[112],"inhomogeneous":[113],"texture.":[114],"Neurite":[115],"results":[117],"well":[119],"quantification":[122],"profiles":[123],"from":[124],"set":[126],"test":[128],"images":[129],"demonstrate":[130],"appropriateness":[132],"our":[134],"practical":[137]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}