{"id":"https://openalex.org/W4205392286","doi":"https://doi.org/10.1109/vcip53242.2021.9675388","title":"Nanopore Sequencing Simulator for DNA Data Storage","display_name":"Nanopore Sequencing Simulator for DNA Data Storage","publication_year":2021,"publication_date":"2021-12-05","ids":{"openalex":"https://openalex.org/W4205392286","doi":"https://doi.org/10.1109/vcip53242.2021.9675388"},"language":"en","primary_location":{"id":"doi:10.1109/vcip53242.2021.9675388","is_oa":false,"landing_page_url":"https://doi.org/10.1109/vcip53242.2021.9675388","pdf_url":null,"source":{"id":"https://openalex.org/S4363608378","display_name":"2021 International Conference on Visual Communications and Image Processing (VCIP)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 International Conference on Visual Communications and Image Processing (VCIP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-03648193","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033952805","display_name":"Eva Gil San Antonio","orcid":null},"institutions":[{"id":"https://openalex.org/I4390039363","display_name":"Infection et inflammation","ror":"https://ror.org/021sh3243","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I4390039363"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210106479","display_name":"Laboratoire d'Informatique, Signaux et Syst\u00e8mes de Sophia Antipolis","ror":"https://ror.org/01215r597","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I201841394","https://openalex.org/I4210106479","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Eva Gil San Antonio","raw_affiliation_strings":["Laboratoire I3S, UMR 7271, Universit\u00e9 C\u00f4te d'Azur, CNRS, Sophia Antipolis, France","Laboratoire I3S - SIS - Signal, Images et Syst\u00e8mes (Laboratoire I3S\r\nCS 40121\r\n06903 Sophia Antipolis Cedex - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire I3S, UMR 7271, Universit\u00e9 C\u00f4te d'Azur, CNRS, Sophia Antipolis, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire I3S - SIS - Signal, Images et Syst\u00e8mes (Laboratoire I3S\r\nCS 40121\r\n06903 Sophia Antipolis Cedex - France)","institution_ids":["https://openalex.org/I4210106479","https://openalex.org/I4390039363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041993379","display_name":"Thomas Heinis","orcid":"https://orcid.org/0000-0002-7470-2123"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Heinis","raw_affiliation_strings":["Imperial College London, London, United Kingdom","Department of Computing [Imperial College London] (London - United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Imperial College London, London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing [Imperial College London] (London - United Kingdom)","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008873929","display_name":"Louis Carteron","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Louis Carteron","raw_affiliation_strings":["Imperial College London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Imperial College London, London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023883144","display_name":"Melpomeni Dimopoulou","orcid":"https://orcid.org/0000-0003-4816-0049"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]},{"id":"https://openalex.org/I4390039363","display_name":"Infection et inflammation","ror":"https://ror.org/021sh3243","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I4390039363"]},{"id":"https://openalex.org/I4210106479","display_name":"Laboratoire d'Informatique, Signaux et Syst\u00e8mes de Sophia Antipolis","ror":"https://ror.org/01215r597","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I201841394","https://openalex.org/I4210106479","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Melpomeni Dimopoulou","raw_affiliation_strings":["Laboratoire I3S, UMR 7271, Universit\u00e9 C\u00f4te d'Azur, CNRS, Sophia Antipolis, France","Laboratoire I3S - SIS - Signal, Images et Syst\u00e8mes (Laboratoire I3S\r\nCS 40121\r\n06903 Sophia Antipolis Cedex - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire I3S, UMR 7271, Universit\u00e9 C\u00f4te d'Azur, CNRS, Sophia Antipolis, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire I3S - SIS - Signal, Images et Syst\u00e8mes (Laboratoire I3S\r\nCS 40121\r\n06903 Sophia Antipolis Cedex - France)","institution_ids":["https://openalex.org/I4210106479","https://openalex.org/I4390039363"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038777297","display_name":"Marc Antonini","orcid":"https://orcid.org/0000-0002-7012-1735"},"institutions":[{"id":"https://openalex.org/I4390039363","display_name":"Infection et inflammation","ror":"https://ror.org/021sh3243","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I195731000","https://openalex.org/I277688954","https://openalex.org/I4390039363"]},{"id":"https://openalex.org/I4210106479","display_name":"Laboratoire d'Informatique, Signaux et Syst\u00e8mes de Sophia Antipolis","ror":"https://ror.org/01215r597","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I201841394","https://openalex.org/I4210106479","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marc Antonini","raw_affiliation_strings":["Laboratoire I3S, UMR 7271, Universit\u00e9 C\u00f4te d'Azur, CNRS, Sophia Antipolis, France","Laboratoire I3S - SIS - Signal, Images et Syst\u00e8mes (Laboratoire I3S\r\nCS 40121\r\n06903 Sophia Antipolis Cedex - France)"],"affiliations":[{"raw_affiliation_string":"Laboratoire I3S, UMR 7271, Universit\u00e9 C\u00f4te d'Azur, CNRS, Sophia Antipolis, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire I3S - SIS - Signal, Images et Syst\u00e8mes (Laboratoire I3S\r\nCS 40121\r\n06903 Sophia Antipolis Cedex - France)","institution_ids":["https://openalex.org/I4210106479","https://openalex.org/I4390039363"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5033952805"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I201841394","https://openalex.org/I4210106479","https://openalex.org/I4390039363"],"apc_list":null,"apc_paid":null,"fwci":1.5704,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.8186864,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6690441370010376},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.5465630292892456},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.45650017261505127},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.3709970712661743},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.35773664712905884},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.1853369176387787},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.15720894932746887},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09506821632385254},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07036212086677551}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6690441370010376},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.5465630292892456},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.45650017261505127},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3709970712661743},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.35773664712905884},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.1853369176387787},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.15720894932746887},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09506821632385254},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07036212086677551}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/vcip53242.2021.9675388","is_oa":false,"landing_page_url":"https://doi.org/10.1109/vcip53242.2021.9675388","pdf_url":null,"source":{"id":"https://openalex.org/S4363608378","display_name":"2021 International Conference on Visual Communications and Image Processing (VCIP)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 International Conference on Visual Communications and Image Processing (VCIP)","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-03648193v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03648193","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2021 International Conference on Visual Communications and Image Processing (VCIP), Dec 2021, Munich, France. pp.1-5, &#x27E8;10.1109/VCIP53242.2021.9675388&#x27E9;","raw_type":"Conference papers"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/97379","is_oa":false,"landing_page_url":"http://hdl.handle.net/10044/1/97379","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE International Conference on Visual Communications and Image Processing (VCIP) - Visual Communications in the Era of AI and Limited Resources","raw_type":"Conference Paper"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-03648193v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03648193","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2021 International Conference on Visual Communications and Image Processing (VCIP), Dec 2021, Munich, France. pp.1-5, &#x27E8;10.1109/VCIP53242.2021.9675388&#x27E9;","raw_type":"Conference papers"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2007772656","https://openalex.org/W2126557729","https://openalex.org/W2524852834","https://openalex.org/W2550586733","https://openalex.org/W2789843538","https://openalex.org/W2912254201","https://openalex.org/W2950266744","https://openalex.org/W2953271242","https://openalex.org/W2962809499","https://openalex.org/W2999719567","https://openalex.org/W3181271702","https://openalex.org/W6727660531","https://openalex.org/W7027630023"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2774675543","https://openalex.org/W2119052929","https://openalex.org/W2326282944","https://openalex.org/W2330402197","https://openalex.org/W3197006535","https://openalex.org/W3201371206","https://openalex.org/W2420153309","https://openalex.org/W2096970964","https://openalex.org/W3175842380"],"abstract_inverted_index":{"The":[0],"exponential":[1],"increase":[2],"of":[3,10,43,54,59,82,91,102,111,127],"digital":[4],"data":[5,64,129],"and":[6],"the":[7,17,41,57,80,89,100,109,125],"limited":[8],"capacity":[9],"current":[11],"storage":[12,22,42,65],"devices":[13],"have":[14,76],"made":[15],"clear":[16],"need":[18],"for":[19,37,49,79],"exploring":[20],"new":[21],"solutions.":[23],"Thanks":[24],"to":[25,32,70,87],"its":[26],"biological":[27],"properties,":[28],"DNA":[29,63,123,128],"has":[30],"proven":[31],"be":[33],"a":[34,46,72,117],"potential":[35],"candidate":[36],"this":[38,83],"task,":[39],"allowing":[40],"information":[44],"at":[45],"high":[47],"density":[48],"hundreds":[50],"or":[51],"even":[52],"thousands":[53],"years.":[55],"With":[56],"release":[58],"nanopore":[60,118],"sequencing":[61,84,101,119],"technologies,":[62],"is":[66],"one":[67],"step":[68],"closer":[69],"become":[71],"reality.":[73],"Many":[74],"works":[75],"proposed":[77],"solutions":[78],"simulation":[81],"step,":[85],"aiming":[86],"ease":[88],"development":[90],"algorithms":[92],"addressing":[93],"nanopore-sequenced":[94],"reads.":[95],"However,":[96],"these":[97],"simulators":[98],"target":[99],"complete":[103],"genomes,":[104],"whose":[105],"characteristics":[106],"differ":[107],"from":[108],"ones":[110],"synthetic":[112,122],"DNA.":[113],"This":[114],"work":[115],"presents":[116],"simulator":[120],"targeting":[121],"on":[124],"context":[126],"storage.":[130]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
