{"id":"https://openalex.org/W4402436772","doi":"https://doi.org/10.1109/tvcg.2024.3456339","title":"VADIS: A Visual Analytics Pipeline for Dynamic Document Representation and Information-Seeking","display_name":"VADIS: A Visual Analytics Pipeline for Dynamic Document Representation and Information-Seeking","publication_year":2024,"publication_date":"2024-09-11","ids":{"openalex":"https://openalex.org/W4402436772","doi":"https://doi.org/10.1109/tvcg.2024.3456339","pmid":"https://pubmed.ncbi.nlm.nih.gov/39259627"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2024.3456339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2024.3456339","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114030345","display_name":"Rui Qiu","orcid":"https://orcid.org/0009-0009-6027-084X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Rui Qiu","raw_affiliation_strings":["Ohio Sate University, USA"],"affiliations":[{"raw_affiliation_string":"Ohio Sate University, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015121983","display_name":"Yamei Tu","orcid":"https://orcid.org/0000-0002-0722-837X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yamei Tu","raw_affiliation_strings":["Ohio Sate University, USA"],"affiliations":[{"raw_affiliation_string":"Ohio Sate University, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001087917","display_name":"Po\u2010Yin Yen","orcid":"https://orcid.org/0000-0002-7061-4185"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Po-Yin Yen","raw_affiliation_strings":["Washington University School of Medicine, USA"],"affiliations":[{"raw_affiliation_string":"Washington University School of Medicine, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065630217","display_name":"Han\u2010Wei Shen","orcid":"https://orcid.org/0000-0002-1211-2320"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Han-Wei Shen","raw_affiliation_strings":["Ohio Sate University, USA"],"affiliations":[{"raw_affiliation_string":"Ohio Sate University, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5114030345"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4986,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.64757327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"31","issue":"1","first_page":"1312","last_page":"1321"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11439","display_name":"Video Analysis and Summarization","score":0.9064000248908997,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8113014698028564},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.7879809141159058},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.620224118232727},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5616130828857422},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5604615211486816},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5413098335266113},{"id":"https://openalex.org/keywords/interactive-visual-analysis","display_name":"Interactive visual analysis","score":0.5396667718887329},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5121111869812012},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.4836943745613098},{"id":"https://openalex.org/keywords/cultural-analytics","display_name":"Cultural analytics","score":0.46718552708625793},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4449269771575928},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4130992889404297},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.327436625957489},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30917322635650635},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.15367639064788818},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10271984338760376}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8113014698028564},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.7879809141159058},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.620224118232727},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5616130828857422},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5604615211486816},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5413098335266113},{"id":"https://openalex.org/C99740376","wikidata":"https://www.wikidata.org/wiki/Q17092520","display_name":"Interactive visual analysis","level":4,"score":0.5396667718887329},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5121111869812012},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.4836943745613098},{"id":"https://openalex.org/C545860419","wikidata":"https://www.wikidata.org/wiki/Q5193251","display_name":"Cultural analytics","level":5,"score":0.46718552708625793},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4449269771575928},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4130992889404297},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.327436625957489},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30917322635650635},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.15367639064788818},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10271984338760376},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tvcg.2024.3456339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2024.3456339","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:39259627","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39259627","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1928454594","https://openalex.org/W1980867644","https://openalex.org/W1990517717","https://openalex.org/W2101746535","https://openalex.org/W2131876387","https://openalex.org/W2136189984","https://openalex.org/W2159201721","https://openalex.org/W2250539671","https://openalex.org/W2251818205","https://openalex.org/W2345881254","https://openalex.org/W2484914291","https://openalex.org/W2592084954","https://openalex.org/W2664793255","https://openalex.org/W2891113091","https://openalex.org/W2911489562","https://openalex.org/W2940542551","https://openalex.org/W2963339397","https://openalex.org/W2963748441","https://openalex.org/W2965373594","https://openalex.org/W2972901249","https://openalex.org/W3011600893","https://openalex.org/W3099700870","https://openalex.org/W3166228523","https://openalex.org/W3191638286","https://openalex.org/W3201382782","https://openalex.org/W4213261683","https://openalex.org/W4235169531","https://openalex.org/W4247726808","https://openalex.org/W4252076394","https://openalex.org/W4308372808","https://openalex.org/W4310461588","https://openalex.org/W4382873849","https://openalex.org/W4385245566","https://openalex.org/W4387047478","https://openalex.org/W4391469382","https://openalex.org/W6679775712","https://openalex.org/W6692899594","https://openalex.org/W6755207826","https://openalex.org/W6769627184","https://openalex.org/W6778883912"],"related_works":["https://openalex.org/W2148525144","https://openalex.org/W3149127250","https://openalex.org/W2158984754","https://openalex.org/W2080934634","https://openalex.org/W4246764483","https://openalex.org/W2564956852","https://openalex.org/W2112083262","https://openalex.org/W2765873974","https://openalex.org/W2013467770","https://openalex.org/W2166699593"],"abstract_inverted_index":{"In":[0,110],"the":[1,5,36,54,67,81,106,146,178,181,187,198,202,208],"biomedical":[2,246],"domain,":[3],"visualizing":[4],"document":[6,37,60,122,139,142,161],"embeddings":[7,38],"of":[8,96,155,201,245],"an":[9],"extensive":[10],"corpus":[11],"has":[12],"been":[13],"widely":[14],"used":[15,39],"in":[16,40,216],"information-seeking":[17,233],"tasks.":[18],"However,":[19],"three":[20],"key":[21],"challenges":[22],"with":[23],"existing":[24,59,86],"visualizations":[25,42],"make":[26],"it":[27,75,99],"difficult":[28,76,100],"for":[29,77,108,120],"clinicians":[30],"to":[31,53,71,79,101,145,169,177,185,196,206,210,220,249],"find":[32],"information":[33,126],"efficiently.":[34],"First,":[35],"these":[41,152],"are":[43,69],"generated":[44],"statically":[45],"by":[46],"pretrained":[47],"language":[48],"models,":[49],"which":[50],"cannot":[51,63],"adapt":[52],"user's":[55,147,199],"evolving":[56],"interest.":[57],"Second,":[58],"visualization":[61,90,194],"techniques":[62],"effectively":[64,150],"display":[65,170],"how":[66],"documents":[68,171],"relevant":[70],"users'":[72],"interest,":[73],"making":[74,98],"users":[78,209,219],"identify":[80,211],"most":[82],"pertinent":[83],"information.":[84],"Third,":[85],"embedding":[87,140],"generation":[88],"and":[89,104,124,141,180,205,223,231,239],"processes":[91],"suffer":[92],"from":[93],"a":[94,115,131,159,165,191,229,242],"lack":[95],"interpretability,":[97,188],"understand,":[102],"trust":[103],"use":[105],"result":[107],"decision-making.":[109],"this":[111],"paper,":[112],"we":[113,157,189],"present":[114],"novel":[116],"visual":[117],"analytics":[118],"pipeline":[119],"user-driven":[121],"representation":[123],"iterative":[125,232],"seeking":[127],"(VADIS).":[128],"VADIS":[129,237],"introduces":[130],"prompt-based":[132],"attention":[133,193],"model":[134,203],"(PAM)":[135],"that":[136,163],"generates":[137],"dynamic":[138,230],"relevance":[143,176],"adjusted":[144],"query.":[148],"To":[149],"visualize":[151],"two":[153],"pieces":[154],"information,":[156],"design":[158],"new":[160,225],"map":[162],"leverages":[164],"circular":[166],"grid":[167],"layout":[168],"based":[172],"on":[173,241],"both":[174],"their":[175],"query":[179],"semantic":[182],"similarity.":[183],"Additionally,":[184],"improve":[186,197],"introduce":[190,224],"corpus-level":[192],"method":[195],"understanding":[200],"focus":[204],"enable":[207],"potential":[212],"oversight.":[213],"This":[214],"visualization,":[215],"turn,":[217],"empowers":[218],"refine,":[221],"update":[222],"queries,":[226],"thereby":[227],"facilitating":[228],"experience.":[234],"We":[235],"evaluated":[236],"quantitatively":[238],"qualitatively":[240],"real-world":[243],"dataset":[244],"research":[247],"papers":[248],"demonstrate":[250],"its":[251],"effectiveness.":[252]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
