{"id":"https://openalex.org/W4402401979","doi":"https://doi.org/10.1109/tvcg.2024.3456312","title":"Quality Metrics and Reordering Strategies for Revealing Patterns in BioFabric Visualizations","display_name":"Quality Metrics and Reordering Strategies for Revealing Patterns in BioFabric Visualizations","publication_year":2024,"publication_date":"2024-09-10","ids":{"openalex":"https://openalex.org/W4402401979","doi":"https://doi.org/10.1109/tvcg.2024.3456312","pmid":"https://pubmed.ncbi.nlm.nih.gov/39255092"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2024.3456312","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2024.3456312","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001876683","display_name":"Johannes Fuchs","orcid":"https://orcid.org/0000-0001-5474-4214"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Fuchs","raw_affiliation_strings":["University of Konstanz, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5474-4214","affiliations":[{"raw_affiliation_string":"University of Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086122336","display_name":"Alexander Frings","orcid":null},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Frings","raw_affiliation_strings":["University of Konstanz, Germany"],"raw_orcid":"https://orcid.org/0009-0009-1718-2967","affiliations":[{"raw_affiliation_string":"University of Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094210168","display_name":"Maria-Viktoria Heinle","orcid":"https://orcid.org/0009-0001-5825-8077"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maria-Viktoria Heinle","raw_affiliation_strings":["University of Konstanz, Germany"],"raw_orcid":"https://orcid.org/0009-0001-5825-8077","affiliations":[{"raw_affiliation_string":"University of Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073919282","display_name":"Daniel A. Keim","orcid":"https://orcid.org/0000-0001-7966-9740"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel A. Keim","raw_affiliation_strings":["University of Konstanz, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7966-9740","affiliations":[{"raw_affiliation_string":"University of Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061093749","display_name":"Sara Di Bartolomeo","orcid":"https://orcid.org/0000-0001-9517-3526"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sara Di Bartolomeo","raw_affiliation_strings":["University of Konstanz and TU Wien, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9517-3526","affiliations":[{"raw_affiliation_string":"University of Konstanz and TU Wien, Germany","institution_ids":["https://openalex.org/I189712700"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I189712700"],"apc_list":null,"apc_paid":null,"fwci":0.6221,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.68086904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"31","issue":"1","first_page":"1039","last_page":"1049"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9538000226020813,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9538000226020813,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8392767906188965},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6130257248878479},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.587676465511322},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.532981812953949},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.316360205411911}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8392767906188965},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6130257248878479},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.587676465511322},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.532981812953949},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.316360205411911},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tvcg.2024.3456312","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2024.3456312","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:39255092","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39255092","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:kops.uni-konstanz.de:123456789/73806","is_oa":false,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bsz:352-2-146soow5gpxev1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401487","display_name":"KOPS (University of Konstanz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189712700","host_organization_name":"University of Konstanz","host_organization_lineage":["https://openalex.org/I189712700"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics. IEEE. 2025, 31(1), S. 1039-1049. ISSN 1077-2626. eISSN 1941-0506. Verf\u00fcgbar unter: doi: 10.1109/tvcg.2024.3456312","raw_type":"doc-type:article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W91761205","https://openalex.org/W1515092984","https://openalex.org/W1553420678","https://openalex.org/W1577253155","https://openalex.org/W1607613323","https://openalex.org/W1971458834","https://openalex.org/W2001914359","https://openalex.org/W2005080287","https://openalex.org/W2021053884","https://openalex.org/W2023416945","https://openalex.org/W2027507818","https://openalex.org/W2031944610","https://openalex.org/W2042199077","https://openalex.org/W2049335983","https://openalex.org/W2073848003","https://openalex.org/W2095420020","https://openalex.org/W2104075446","https://openalex.org/W2104592282","https://openalex.org/W2110746712","https://openalex.org/W2115181545","https://openalex.org/W2126536832","https://openalex.org/W2127405101","https://openalex.org/W2132022337","https://openalex.org/W2145640629","https://openalex.org/W2147405597","https://openalex.org/W2153624566","https://openalex.org/W2157348185","https://openalex.org/W2157479314","https://openalex.org/W2167482691","https://openalex.org/W2167983404","https://openalex.org/W2412593044","https://openalex.org/W2469514293","https://openalex.org/W2485962973","https://openalex.org/W2620734284","https://openalex.org/W2815307792","https://openalex.org/W2891571448","https://openalex.org/W2956831428","https://openalex.org/W2966278351","https://openalex.org/W2970728072","https://openalex.org/W3002194360","https://openalex.org/W3204059120","https://openalex.org/W4280557645","https://openalex.org/W4282813491","https://openalex.org/W4387183640","https://openalex.org/W4396614324","https://openalex.org/W4399387634","https://openalex.org/W6682298320","https://openalex.org/W6716047038","https://openalex.org/W6731270529"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2189613078","https://openalex.org/W2586219255","https://openalex.org/W2547096368"],"abstract_inverted_index":{"Visualizing":[0],"relational":[1],"data":[2,176],"is":[3,106,206],"crucial":[4],"for":[5,203,229],"understanding":[6],"complex":[7],"connections":[8],"between":[9],"entities":[10],"in":[11,40,54,137],"social":[12],"networks,":[13],"political":[14],"affiliations,":[15],"or":[16,64,142],"biological":[17],"interactions.":[18],"Well-known":[19],"representations":[20],"like":[21],"node-link":[22,78,92],"diagrams":[23,79,93],"and":[24,47,80,94,112,135,150,220,239,247],"adjacency":[25,81,99],"matrices":[26],"offer":[27],"valuable":[28],"insights,":[29],"but":[30],"their":[31,155],"effectiveness":[32],"relies":[33],"on":[34,158,189,217],"the":[35,41,55,59,67,84,88,95,107,117,182,193,200],"ability":[36],"to":[37,109,146,153,170],"identify":[38],"patterns":[39,134,191],"underlying":[42],"topological":[43],"structure.":[44],"Reordering":[45],"strategies":[46],"layout":[48,123],"algorithms":[49,124],"play":[50],"a":[51,173,186,207,225],"vital":[52],"role":[53],"visualization":[56,74],"process":[57],"since":[58],"arrangement":[60],"of":[61,69,77,86,91,98,104,119,122,165,244],"nodes,":[62],"edges,":[63],"cells":[65],"influences":[66],"visibility":[68],"these":[70,159],"patterns.":[71,128],"The":[72,196],"BioFabric":[73,105,171],"combines":[75],"elements":[76],"matrices,":[82],"leveraging":[83],"strengths":[85],"both,":[87],"visual":[89],"clarity":[90],"tabular":[96],"organization":[97],"matrices.":[100],"A":[101,241],"unique":[102],"characteristic":[103],"possibility":[108],"reorder":[110],"nodes":[111],"edges":[113],"separately.":[114],"This":[115],"raises":[116],"question":[118],"which":[120,235],"combination":[121,202],"best":[125,201],"reveals":[126],"certain":[127],"In":[129],"this":[130,245],"paper,":[131],"we":[132,162,236],"discuss":[133],"anti-patterns":[136],"BioFabric,":[138],"such":[139],"as":[140],"staircases":[141,205],"escalators,":[143],"relate":[144],"them":[145],"already":[147],"established":[148],"patterns,":[149],"propose":[151],"metrics":[152],"evaluate":[154],"quality.":[156],"Based":[157],"quality":[160],"metrics,":[161],"compared":[163],"combinations":[164],"well-established":[166],"reordering":[167],"techniques":[168],"applied":[169],"with":[172,212],"well-known":[174],"benchmark":[175],"set.":[177],"Our":[178,222],"experiments":[179],"indicate":[180],"that":[181,199],"edge":[183,214],"order":[184,215],"has":[185],"stronger":[187],"influence":[188],"revealing":[190,204],"than":[192],"node":[194,209,218],"layout.":[195],"results":[197],"show":[198],"barycentric":[208],"layout,":[210],"together":[211],"an":[213],"based":[216],"indices":[219],"length.":[221],"research":[223,233],"contributes":[224],"first":[226],"building":[227],"block":[228],"many":[230],"promising":[231],"future":[232],"directions,":[234],"also":[237],"share":[238],"discuss.":[240],"free":[242],"copy":[243],"paper":[246],"all":[248],"supplemental":[249],"materials":[250],"are":[251],"available":[252],"at":[253],"https://osf.io/9mt8r/?view_only=b7t0dfbe550e3404f83059afdc60184c6.":[254]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}