{"id":"https://openalex.org/W4379983278","doi":"https://doi.org/10.1109/tvcg.2023.3284499","title":"Optimally Ordered Orthogonal Neighbor Joining Trees for Hierarchical Cluster Analysis","display_name":"Optimally Ordered Orthogonal Neighbor Joining Trees for Hierarchical Cluster Analysis","publication_year":2023,"publication_date":"2023-06-09","ids":{"openalex":"https://openalex.org/W4379983278","doi":"https://doi.org/10.1109/tvcg.2023.3284499","pmid":"https://pubmed.ncbi.nlm.nih.gov/37294655"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2023.3284499","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2023.3284499","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053361220","display_name":"Tong Ge","orcid":"https://orcid.org/0000-0002-6758-9652"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tong Ge","raw_affiliation_strings":["Department of Computer Science, Shandong University, Shandong, Jinan, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Shandong University, Shandong, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102843311","display_name":"Luo Xu","orcid":"https://orcid.org/0000-0003-1501-7385"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu Luo","raw_affiliation_strings":["Department of Computer Science, Shandong University, Shandong, Jinan, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Shandong University, Shandong, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068526974","display_name":"Yunhai Wang","orcid":"https://orcid.org/0000-0003-0059-6580"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunhai Wang","raw_affiliation_strings":["Department of Computer Science, Shandong University, Shandong, Jinan, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Shandong University, Shandong, Jinan, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037110552","display_name":"Michael Sedlmair","orcid":"https://orcid.org/0000-0001-7048-9292"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Sedlmair","raw_affiliation_strings":["University of Stuttgart, Stuttgart, Germany"],"affiliations":[{"raw_affiliation_string":"University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005647036","display_name":"Zhanglin Cheng","orcid":"https://orcid.org/0000-0002-3360-2679"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhanglin Cheng","raw_affiliation_strings":["Shenzhen VisuCA Key Lab, SIAT, Shenzhen, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen VisuCA Key Lab, SIAT, Shenzhen, Guangdong, China","institution_ids":["https://openalex.org/I158809036"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071560359","display_name":"Ying Zhao","orcid":"https://orcid.org/0000-0002-4200-5200"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Zhao","raw_affiliation_strings":["Central South University, Changsha, Hunan, China"],"affiliations":[{"raw_affiliation_string":"Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100352324","display_name":"Xin Liu","orcid":"https://orcid.org/0000-0003-3256-2940"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Liu","raw_affiliation_strings":["Beijing Genomics Institute BGI Research, Shenzhen, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"Beijing Genomics Institute BGI Research, Shenzhen, Guangdong, China","institution_ids":["https://openalex.org/I4387153646","https://openalex.org/I100135526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036489223","display_name":"Oliver Deu\u00dfen","orcid":"https://orcid.org/0000-0001-5803-2185"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Deussen","raw_affiliation_strings":["University of Konstanz, Konstanz, Germany"],"affiliations":[{"raw_affiliation_string":"University of Konstanz, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010714340","display_name":"Baoquan Chen","orcid":"https://orcid.org/0000-0003-4702-036X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Baoquan Chen","raw_affiliation_strings":["Peking University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5053361220"],"corresponding_institution_ids":["https://openalex.org/I154099455"],"apc_list":null,"apc_paid":null,"fwci":1.0438,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.80877407,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"30","issue":"8","first_page":"5034","last_page":"5046"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11106","display_name":"Data Management and Algorithms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10057","display_name":"Face and Expression Recognition","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6873660683631897},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.6871746182441711},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.4859510660171509},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38864433765411377},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3774949610233307},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3745514154434204},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34940069913864136},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3269042372703552},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.2973858714103699}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6873660683631897},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.6871746182441711},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.4859510660171509},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38864433765411377},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3774949610233307},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3745514154434204},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34940069913864136},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3269042372703552},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.2973858714103699},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tvcg.2023.3284499","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2023.3284499","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:37294655","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37294655","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1557284415","https://openalex.org/W1971318281","https://openalex.org/W1973354049","https://openalex.org/W1985064024","https://openalex.org/W1986539189","https://openalex.org/W1998871699","https://openalex.org/W2016728733","https://openalex.org/W2022948797","https://openalex.org/W2035890032","https://openalex.org/W2041596509","https://openalex.org/W2047752105","https://openalex.org/W2055063781","https://openalex.org/W2062937620","https://openalex.org/W2064251379","https://openalex.org/W2067752346","https://openalex.org/W2082445660","https://openalex.org/W2088879945","https://openalex.org/W2090106709","https://openalex.org/W2097706568","https://openalex.org/W2098181012","https://openalex.org/W2099901798","https://openalex.org/W2101474491","https://openalex.org/W2103991913","https://openalex.org/W2106588364","https://openalex.org/W2112648573","https://openalex.org/W2119111481","https://openalex.org/W2129816388","https://openalex.org/W2137215532","https://openalex.org/W2140190241","https://openalex.org/W2143326696","https://openalex.org/W2149306172","https://openalex.org/W2150926065","https://openalex.org/W2153077944","https://openalex.org/W2156974804","https://openalex.org/W2158703410","https://openalex.org/W2161381700","https://openalex.org/W2169702034","https://openalex.org/W2171188433","https://openalex.org/W2326410931","https://openalex.org/W2750867444","https://openalex.org/W2805815766","https://openalex.org/W2883251903","https://openalex.org/W3118608800","https://openalex.org/W4235520738","https://openalex.org/W4244030505","https://openalex.org/W4255938757","https://openalex.org/W6675471587","https://openalex.org/W6787972765","https://openalex.org/W7045329624"],"related_works":["https://openalex.org/W4292477917","https://openalex.org/W1597862883","https://openalex.org/W2922052015","https://openalex.org/W2519917623","https://openalex.org/W3121455318","https://openalex.org/W2107962325","https://openalex.org/W4232020296","https://openalex.org/W2248928492","https://openalex.org/W2488882714","https://openalex.org/W2379037722"],"abstract_inverted_index":{"We":[0,67],"propose":[1,82],"to":[2,16,40,47,83,93,109],"use":[3,73,84],"optimally":[4],"ordered":[5,117],"orthogonal":[6],"neighbor-joining":[7],"(O":[8],"<sup>3</sup>":[9],"NJ)":[10],"trees":[11,28,53,62,70],"as":[12,139],"a":[13,85,101,106],"new":[14,107],"way":[15],"visually":[17,110],"explore":[18],"cluster":[19,113],"structures":[20],"and":[21,34,97,122],"outliers":[22],"in":[23,32,61,74,77,136],"multi-dimensional":[24,134],"data.":[25],"Neighbor-joining":[26],"(NJ)":[27],"are":[29],"widely":[30],"used":[31],"biology,":[33],"their":[35,72],"visual":[36,75],"representation":[37],"is":[38,50],"similar":[39],"that":[41,51,90],"of":[42,129],"dendrograms.":[43],"The":[44],"core":[45],"difference":[46],"dendrograms,":[48],"however,":[49],"NJ":[52,69,118],"correctly":[54],"encode":[55],"distances":[56],"between":[57],"data":[58,135],"points,":[59],"resulting":[60],"with":[63],"varying":[64],"edge":[65],"lengths.":[66],"optimize":[68],"for":[71,132],"analysis":[76],"two":[78],"ways.":[79],"First,":[80],"we":[81,104],"novel":[86],"leaf":[87],"sorting":[88],"algorithm":[89],"helps":[91],"users":[92],"better":[94],"interpret":[95],"adjacencies":[96],"proximities":[98],"within":[99],"such":[100,138],"tree.":[102,119],"Second,":[103],"provide":[105],"method":[108],"distill":[111],"the":[112,127],"tree":[114],"from":[115],"an":[116],"Numerical":[120],"evaluation":[121],"three":[123],"case":[124],"studies":[125],"illustrate":[126],"benefits":[128],"this":[130],"approach":[131],"exploring":[133],"areas":[137],"biology":[140],"or":[141],"image":[142],"analysis.":[143]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
