{"id":"https://openalex.org/W4297461946","doi":"https://doi.org/10.1109/tvcg.2022.3209434","title":"MedChemLens: An Interactive Visual Tool to Support Direction Selection in Interdisciplinary Experimental Research of Medicinal Chemistry","display_name":"MedChemLens: An Interactive Visual Tool to Support Direction Selection in Interdisciplinary Experimental Research of Medicinal Chemistry","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4297461946","doi":"https://doi.org/10.1109/tvcg.2022.3209434","pmid":"https://pubmed.ncbi.nlm.nih.gov/36166547"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2022.3209434","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209434","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044403966","display_name":"Chuhan Shi","orcid":"https://orcid.org/0000-0002-3370-1626"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Chuhan Shi","raw_affiliation_strings":["Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056388611","display_name":"Fei Nie","orcid":null},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Fei Nie","raw_affiliation_strings":["Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046515661","display_name":"Yicheng Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yicheng Hu","raw_affiliation_strings":["Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054178885","display_name":"Yige Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yige Xu","raw_affiliation_strings":["Nanyang Technological University, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100333516","display_name":"Lei Chen","orcid":"https://orcid.org/0000-0002-8257-5806"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Lei Chen","raw_affiliation_strings":["Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":"https://orcid.org/0000-0002-8257-5806","affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026376235","display_name":"Xiaojuan Ma","orcid":"https://orcid.org/0000-0002-9847-7784"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xiaojuan Ma","raw_affiliation_strings":["Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":"https://orcid.org/0000-0002-9847-7784","affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100667713","display_name":"Qiong Luo","orcid":"https://orcid.org/0000-0002-4275-1756"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Qiong Luo","raw_affiliation_strings":["Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":"https://orcid.org/0000-0002-4275-1756","affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2932,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.82240767,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"29","issue":"1","first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9660999774932861,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7084431052207947},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.63170325756073},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6101372838020325},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5631846189498901},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5393099784851074},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5197269916534424},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5008399486541748},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.46005815267562866},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4222438335418701},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2531898021697998}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7084431052207947},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.63170325756073},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6101372838020325},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5631846189498901},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5393099784851074},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5197269916534424},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5008399486541748},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.46005815267562866},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4222438335418701},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2531898021697998},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002626","descriptor_name":"Chemistry, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002626","descriptor_name":"Chemistry, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002626","descriptor_name":"Chemistry, Pharmaceutical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tvcg.2022.3209434","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209434","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:36166547","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36166547","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-122077","is_oa":false,"landing_page_url":"https://repository.hkust.edu.hk/ir/Record/1783.1-122077","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W67756931","https://openalex.org/W1495643041","https://openalex.org/W1569531029","https://openalex.org/W1928454594","https://openalex.org/W1967032556","https://openalex.org/W1975147762","https://openalex.org/W1988037271","https://openalex.org/W1992492534","https://openalex.org/W2009081245","https://openalex.org/W2035926928","https://openalex.org/W2038586428","https://openalex.org/W2049248235","https://openalex.org/W2051167396","https://openalex.org/W2054052884","https://openalex.org/W2057444996","https://openalex.org/W2081517917","https://openalex.org/W2084939613","https://openalex.org/W2086253281","https://openalex.org/W2087382273","https://openalex.org/W2100528947","https://openalex.org/W2117616434","https://openalex.org/W2122843645","https://openalex.org/W2132068911","https://openalex.org/W2140038674","https://openalex.org/W2146185088","https://openalex.org/W2151823004","https://openalex.org/W2163354434","https://openalex.org/W2171892642","https://openalex.org/W2177317049","https://openalex.org/W2362265365","https://openalex.org/W2509053658","https://openalex.org/W2542889218","https://openalex.org/W2557530941","https://openalex.org/W2558366645","https://openalex.org/W2558461359","https://openalex.org/W2605279112","https://openalex.org/W2692768525","https://openalex.org/W2767596132","https://openalex.org/W2781620754","https://openalex.org/W2803560454","https://openalex.org/W2807230071","https://openalex.org/W2892162703","https://openalex.org/W2900090807","https://openalex.org/W2900484719","https://openalex.org/W2905265346","https://openalex.org/W2943575207","https://openalex.org/W2963341956","https://openalex.org/W2978670439","https://openalex.org/W2989629366","https://openalex.org/W3013318641","https://openalex.org/W3021298618","https://openalex.org/W3081305419","https://openalex.org/W3088290493","https://openalex.org/W3123806947","https://openalex.org/W3128980039","https://openalex.org/W3134408619","https://openalex.org/W3138055079","https://openalex.org/W3139513679","https://openalex.org/W3160312683","https://openalex.org/W4240211576","https://openalex.org/W6604148368","https://openalex.org/W6675183058","https://openalex.org/W6682034404","https://openalex.org/W6770327640"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W2389015757"],"abstract_inverted_index":{"Interdisciplinary":[0],"experimental":[1],"science":[2],"(e.g.,":[3],"medicinal":[4,120,134],"chemistry)":[5],"refers":[6],"to":[7,28,70,102,132],"the":[8,21,33,36,42,49,83,88,104,112,163,180,200],"disciplines":[9,80],"that":[10,67],"integrate":[11,71],"knowledge":[12],"from":[13,73,77,169],"different":[14],"scientific":[15],"backgrounds":[16],"and":[17,45,81,106,125,172,183,226],"involve":[18],"experiments":[19,110],"in":[20,38,66,94,108,111,136,223],"research":[22,37,51],"process.":[23],"Deciding":[24],"\"in":[25],"what":[26],"direction":[27,61],"proceed\"":[29],"is":[30,64,145],"critical":[31],"for":[32],"success":[34],"of":[35,48,86,141,166],"such":[39,59],"disciplines,":[40],"since":[41],"time,":[43],"money,":[44],"resource":[46],"costs":[47],"subsequent":[50,188],"steps":[52],"depend":[53],"largely":[54],"on":[55,179],"this":[56,116],"decision.":[57],"However,":[58],"a":[60,123,156,194],"identification":[62],"task":[63,98,144],"challenging":[65],"researchers":[68,101],"need":[69],"information":[72],"large-scale,":[74],"heterogeneous":[75],"materials":[76],"all":[78],"associated":[79],"summarize":[82],"related":[84],"publications":[85],"which":[87],"core":[89],"contributions":[90],"are":[91],"often":[92],"showcased":[93],"diverse":[95],"formats.":[96],"The":[97],"also":[99,146],"requires":[100],"estimate":[103],"feasibility":[105],"potential":[107],"future":[109],"selected":[113,119],"directions.":[114],"In":[115],"work,":[117],"we":[118],"chemistry":[121],"as":[122,148],"case":[124],"presented":[126],"an":[127],"interactive":[128],"visual":[129],"tool,":[130],"MedChemLens,":[131],"assist":[133],"chemists":[135],"choosing":[137],"their":[138,224],"intended":[139],"directions":[140],"research.":[142],"This":[143],"known":[147],"drug":[149,167,181],"target":[150,158],"(i.e.,":[151,203],"disease-linked":[152],"proteins)":[153],"selection.":[154],"Given":[155],"candidate":[157],"name,":[159],"MedChemLens":[160,192,215],"automatically":[161],"extracts":[162],"molecular":[164],"features":[165],"compounds":[168],"chemical":[170],"papers":[171],"clinical":[173],"trial":[174],"records,":[175],"organizes":[176],"them":[177],"based":[178],"structures,":[182],"interactively":[184],"visualizes":[185],"factors":[186],"concerning":[187],"experiments.":[189],"We":[190],"evaluated":[191],"through":[193],"within-subjects":[195],"study":[196],"(N=16).":[197],"Compared":[198],"with":[199],"control":[201],"condition":[202],"unrestricted":[204],"online":[205],"search":[206],"without":[207],"using":[208],"our":[209],"tool),":[210],"participants":[211],"who":[212],"only":[213],"used":[214],"reported":[216],"faster":[217],"search,":[218],"better-informed":[219],"selections,":[220,225],"higher":[221],"confidence":[222],"lower":[227],"cognitive":[228],"load.":[229]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
